PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06026g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 561aa    MW: 61216.4 Da    PI: 7.0495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06026g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.7e-29322377359
                               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               DgynWrKYG K+vk se+prsYY+Ct  +Cpvkkkvers  d++++eitY+g Hnhe
  Niben101Scf06026g01003.1 322 DGYNWRKYGEKKVKASECPRSYYKCTNLKCPVKKKVERSV-DGHITEITYNGWHNHE 377
                               9***************************************.***************7 PP
2WRKY105.92.1e-33492550159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk v++tYeg+Hnh+
  Niben101Scf06026g01003.1 492 LDDGYKWRKYGQKVVKGNQHPRSYYRCTYPGCNVRKQVERASTDPKSVITTYEGKHNHD 550
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-26316379IPR003657WRKY domain
SuperFamilySSF1182906.93E-23319379IPR003657WRKY domain
SMARTSM007741.6E-30320378IPR003657WRKY domain
PfamPF031063.1E-21322377IPR003657WRKY domain
PROSITE profilePS5081122.125322379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.1E-36478552IPR003657WRKY domain
SuperFamilySSF1182901.44E-29484552IPR003657WRKY domain
PROSITE profilePS5081135.645487552IPR003657WRKY domain
SMARTSM007743.7E-39492551IPR003657WRKY domain
PfamPF031062.4E-26493550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGETGGASAM SFPALTIPPR PSFESFLSNL PSFSPGPMSL VSSFFSDQSP DSSDYPSFSQ  60
LLAGAMASPL AKPAILPDNS GEGSQKSSGY KQNRPMGLVL AQSPLFMIPP GLSPSGLLNS  120
PGFLSPLQSP FGMSHQQALA HSPDSSDYPS FSQLLAGAMA SPLAKPAILP DNSGEGSQKS  180
SGYKQNRPMG LVLAQSPLFM IPPGLSPSGL LNSPGFLSPL QSPFGMSHQQ ALAHVTAQAA  240
FSNSYMQMQA EDQCSSQVAS AEALGHELTT ELEETSLQLK EPSQTRMDSE PSDKQGKKFE  300
LQEFSQSENK PSFVAVEKPP CDGYNWRKYG EKKVKASECP RSYYKCTNLK CPVKKKVERS  360
VDGHITEITY NGWHNHELPQ PTKQRKDGST LDGSDCSEVR PDTRTHDWPV MNNSSDGSSH  420
TRSDQVSNQM VSELLVKSEC DEIKNILVAV DDGHDEPNAK RTKTAVETVA SSHGTVAESK  480
IVLQTRSEVE FLDDGYKWRK YGQKVVKGNQ HPRSYYRCTY PGCNVRKQVE RASTDPKSVI  540
TTYEGKHNHD IPTLRNRNSQ R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35322552877Probable WRKY transcription factor 4
2lex_A2e-35322552877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768533.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_016436720.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI901e-113WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0P0UVE60.0A0A0P0UVE6_NICBE; Transcription factor
STRINGXP_009768533.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-114WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]