PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05621g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 138aa    MW: 15404.7 Da    PI: 10.395
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05621g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC582.1e-1815991497
                     NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                               ++++ ++Pl r+kki+k d+d++++ +ea  l++ + elf+  lt +s   a e+kr+t+k   +  av+r + + dfl+d  p
  Niben101Scf05621g02012.1 15 GEVHQLQIPLGRVKKIMKLDQDINKVNSEALHLIASSTELFLEVLTEKSAQVALEKKRKTIKLEHLRVAVKRHQpTNDFLLDSLP 99
                              678999****************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.65E-207100IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-211885IPR009072Histone-fold
PfamPF008083.0E-192184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAGEDVEKNS TAAGGEVHQL QIPLGRVKKI MKLDQDINKV NSEALHLIAS STELFLEVLT  60
EKSAQVALEK KRKTIKLEHL RVAVKRHQPT NDFLLDSLPV PSQPSDSSPK VQNRPRLSTE  120
KPLLSGTRRI EAFFQKST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786327.12e-91PREDICTED: nuclear transcription factor Y subunit C-1
RefseqXP_016460645.12e-91PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBLA0A1S3Z8414e-90A0A1S3Z841_TOBAC; nuclear transcription factor Y subunit C-1-like
TrEMBLA0A1U7X2E84e-90A0A1U7X2E8_NICSY; nuclear transcription factor Y subunit C-1
STRINGXP_009786327.16e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.17e-47nuclear factor Y, subunit C13