PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05449g03005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 190aa MW: 21441.6 Da PI: 9.3325 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 32.4 | 1.3e-10 | 160 | 179 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+ttkTplWR+gp g+k Niben101Scf05449g03005.1 160 CSDCNTTKTPLWRSGPKGPK 179 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0035 | 154 | 189 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-5 | 157 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.5E-8 | 158 | 179 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 9.341 | 158 | 177 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.6E-8 | 160 | 179 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MIPTFRSSSS SPSFPFELNN NEVHDPSHIN PLVSPSYQVA SSSSYSSCQT FFTNSSTNQD 60 QTGYYNSQFY QPQHQPEVDN FASRSGSHDP LEKKHKGLKL TLWKKGDKLM QKMKNSDHTH 120 IKLKLEDQKK QQSSPNLETD YSSNSSSNNS NNNNIPIRVC SDCNTTKTPL WRSGPKGPKV 180 IFSYSITINN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016488017.1 | 3e-96 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | A0A1S4BGN5 | 6e-95 | A0A1S4BGN5_TOBAC; putative GATA transcription factor 22 | ||||
STRING | Solyc12g008830.1.1 | 2e-44 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 6e-11 | GATA family protein |