PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05440g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 353aa    MW: 39616.3 Da    PI: 7.2822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05440g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19169219256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Niben101Scf05440g02002.1 169 LYRGVRQRH-WGKWVAEIRLPRK---RTRLWLGTFDTAEDAAMAYDREAYKLRGE 219
                               59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-33168228No hitNo description
SuperFamilySSF541711.31E-22169227IPR016177DNA-binding domain
SMARTSM003807.5E-39169232IPR001471AP2/ERF domain
PROSITE profilePS5103223.09169226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32169227IPR001471AP2/ERF domain
PRINTSPR003675.3E-11170181IPR001471AP2/ERF domain
PfamPF008472.6E-12170219IPR001471AP2/ERF domain
PRINTSPR003675.3E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNWQRDNGKD FNTSFEKKIK RPEHQLCFQS SVSSSHQTLL QSSVPYSTPT HTAFSPPPLS  60
SSTSRSSRVV FPFALDGTQQ SIESLHQLRS NSTPLFRPMH QNQQQMISFS AQHPQSMELG  120
PFQHQLQQCN ETLHLSPRGT TMMLNKSGQN NRVPLFSPLL QHPYSTTKLY RGVRQRHWGK  180
WVAEIRLPRK RTRLWLGTFD TAEDAAMAYD REAYKLRGEN AKLNFPELFI SKHKVAISSS  240
PTASHESALP GIEMQLAPLP PSECGNFEEE TGSEVIANDG VQSNVENCGA LTQLSDFEAW  300
LNAIPEGWGP GSPVWDHLDT NNNLILSHTI NLGDVHQQKP HNSDLEGTTK PLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21168226160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225322.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A314KTP40.0A0A314KTP4_NICAT; Ethylene-responsive transcription factor erf053
STRINGXP_009787574.11e-180(Nicotiana sylvestris)
STRINGXP_009592286.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-57ERF family protein