PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05374g01020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 240aa MW: 26735.8 Da PI: 5.1377 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.4 | 4.1e-53 | 61 | 154 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 reqdrf+Pianv+rim+++lP +akis+d+ket+qecvsefisf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++y Niben101Scf05374g01020.1 61 REQDRFMPIANVIRIMRRILPPHAKISDDSKETIQECVSEFISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLY 145 89*********************************************************************************** PP NF-YB 87 lkkyreleg 95 l++yre++g Niben101Scf05374g01020.1 146 LHRYREFDG 154 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-50 | 54 | 160 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.04E-38 | 63 | 160 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-25 | 66 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-16 | 94 | 112 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 97 | 113 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.1E-16 | 113 | 131 | No hit | No description |
PRINTS | PR00615 | 1.1E-16 | 132 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDNLGGGNGN GGFHGYRRFP QPTPATDMSM GLSAHLNQAI AANTNNNGTN NSEQDSECTI 60 REQDRFMPIA NVIRIMRRIL PPHAKISDDS KETIQECVSE FISFITGEAN ERCQREQRKT 120 ITAEDVLWAM SKLGFDDYIE PLTLYLHRYR EFDGGERGSL RGEPLLMKRP MMDPASASMT 180 TMAPYQLPPF QIAHHHGYFA YPPPMGNGYM QRDASNGSSS HGAVATMEND VESLAEEGKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-63 | 56 | 151 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611476.1 | 1e-153 | PREDICTED: nuclear transcription factor Y subunit B-6 | ||||
Refseq | XP_009781818.1 | 1e-152 | PREDICTED: nuclear transcription factor Y subunit B-6-like | ||||
Swissprot | Q84W66 | 7e-70 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1U7WT93 | 1e-151 | A0A1U7WT93_NICSY; nuclear transcription factor Y subunit B-6-like | ||||
STRING | XP_009781818.1 | 1e-152 | (Nicotiana sylvestris) | ||||
STRING | XP_009611476.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-68 | nuclear factor Y, subunit B6 |