PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05311g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 210aa MW: 23254.2 Da PI: 4.37 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ +++ C ++ lC++C e H Niben101Scf05311g01008.1 4 QCDVCEKAQATVICCADEAALCAKCDIEVHA 34 7******99*******************995 PP | |||||||
2 | zf-B_box | 18.2 | 5.1e-06 | 42 | 70 | 16 | 38 |
zf-B_box 16 lfCedCqqllCedClleeHkg......Ht 38 +fC +++ l+C+dC +++H+ H+ Niben101Scf05311g01008.1 42 IFCVEDRALFCKDCDEAIHSAsslaanHQ 70 5******************6566666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00021 | 2.23E-5 | 3 | 35 | No hit | No description |
SMART | SM00336 | 7.9E-8 | 20 | 74 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.52E-4 | 27 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MKIQCDVCEK AQATVICCAD EAALCAKCDI EVHAANKLAT FIFCVEDRAL FCKDCDEAIH 60 SASSLAANHQ RFLATGIRVA LSSSCNKEAV KTQLEPPQPP QQNSQQVGLK MPPHQLSGIT 120 SPSWPVDDLL GFPDYDSTDK KELLELGELE WLGDIDLFGE QTAAEVPELS VSQSSNTHNI 180 YKQTRYQMSY KKPRIEIPDD DEYFTVPDLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312926.1 | 1e-122 | B-box zinc finger protein 24-like | ||||
Refseq | XP_009605010.1 | 1e-122 | PREDICTED: B-box zinc finger protein 24-like | ||||
Refseq | XP_016500562.1 | 1e-122 | PREDICTED: B-box zinc finger protein 24-like isoform X1 | ||||
Swissprot | Q96288 | 3e-71 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | Q3HVM6 | 1e-123 | Q3HVM6_SOLTU; Fructokinase 2-like protein | ||||
STRING | XP_009605010.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5410 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 4e-61 | salt tolerance homologue |
Publications ? help Back to Top | |||
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