PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05301g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 952aa    MW: 104571 Da    PI: 5.8474
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05301g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.43.3e-05688748154
                               TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 
                               +rkRt ++++q+  +e++     +++ ++++ e  Ak+l     ++t++q k+W  Nr+a+
  Niben101Scf05301g00007.1 688 KRKRTIMNEKQISLMEKALMDepDMHRNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 748
                               79*****************9834555567789999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-5675749IPR009057Homeodomain-like
PROSITE profilePS5007111.24685752IPR001356Homeobox domain
SMARTSM003892.9E-5687756IPR001356Homeobox domain
CDDcd000866.26E-6688751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 952 aa     Download sequence    Send to blast
MKKEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLV FYSLVILCTH SKVSNDMGLF HSTLVASSLY LLTVCISSQW HDLAQVLLAY  180
YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS  240
LCQQKSFRER LVKNKELSCK GGVLLLAQAV MHLDVSPLVT LSSSIIAAVS RLKSKVLSIL  300
LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SDKIYPKGHL  360
QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVEHGEF VSSWCSSDLP IREEDATLEY  420
DPFAAAGWVL DLFPFSDQSN ATSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI  480
CKEEKDLFLN KFVQCLRTKV SETPEGFKSI SDSQKAATVS RNLGSLLSHA ESLIPAFLNE  540
EDVQLLRVFI TQLESLTTPR ACGENRVQEA QNLGACLPLQ LREVAMDLNN RLNQLNSRVN  600
GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE  660
KINCNGPGDG REDEMAEASQ REEKQQRKRK RTIMNEKQIS LMEKALMDEP DMHRNKASLE  720
FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP  780
GSPVEDVGNL SAARENVQRV TGPAPTTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE  840
EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKLGESKAP QFLIKEATPI TIFAHRSSCS  900
KLIITGGIRG PHVGGLMNLS HAVTGLMPEL ENYPVLVKGD TILVACCGTI SG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225558.10.0PREDICTED: nodulin homeobox
RefseqXP_019225559.10.0PREDICTED: nodulin homeobox
RefseqXP_019225560.10.0PREDICTED: nodulin homeobox
RefseqXP_019225561.10.0PREDICTED: nodulin homeobox
TrEMBLA0A314KT920.0A0A314KT92_NICAT; Nodulin homeobox
STRINGXP_009778419.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA784457