PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05301g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 952aa MW: 104571 Da PI: 5.8474 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.4 | 3.3e-05 | 688 | 748 | 1 | 54 |
TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ +++ ++++ e Ak+l ++t++q k+W Nr+a+ Niben101Scf05301g00007.1 688 KRKRTIMNEKQISLMEKALMDepDMHRNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 748 79*****************9834555567789999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 675 | 749 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.24 | 685 | 752 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-5 | 687 | 756 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.26E-6 | 688 | 751 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 952 aa Download sequence Send to blast |
MKKEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLV FYSLVILCTH SKVSNDMGLF HSTLVASSLY LLTVCISSQW HDLAQVLLAY 180 YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS 240 LCQQKSFRER LVKNKELSCK GGVLLLAQAV MHLDVSPLVT LSSSIIAAVS RLKSKVLSIL 300 LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SDKIYPKGHL 360 QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVEHGEF VSSWCSSDLP IREEDATLEY 420 DPFAAAGWVL DLFPFSDQSN ATSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI 480 CKEEKDLFLN KFVQCLRTKV SETPEGFKSI SDSQKAATVS RNLGSLLSHA ESLIPAFLNE 540 EDVQLLRVFI TQLESLTTPR ACGENRVQEA QNLGACLPLQ LREVAMDLNN RLNQLNSRVN 600 GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE 660 KINCNGPGDG REDEMAEASQ REEKQQRKRK RTIMNEKQIS LMEKALMDEP DMHRNKASLE 720 FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP 780 GSPVEDVGNL SAARENVQRV TGPAPTTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE 840 EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKLGESKAP QFLIKEATPI TIFAHRSSCS 900 KLIITGGIRG PHVGGLMNLS HAVTGLMPEL ENYPVLVKGD TILVACCGTI SG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019225558.1 | 0.0 | PREDICTED: nodulin homeobox | ||||
Refseq | XP_019225559.1 | 0.0 | PREDICTED: nodulin homeobox | ||||
Refseq | XP_019225560.1 | 0.0 | PREDICTED: nodulin homeobox | ||||
Refseq | XP_019225561.1 | 0.0 | PREDICTED: nodulin homeobox | ||||
TrEMBL | A0A314KT92 | 0.0 | A0A314KT92_NICAT; Nodulin homeobox | ||||
STRING | XP_009778419.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7844 | 5 | 7 |