PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05166g02006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 638aa    MW: 69573.7 Da    PI: 7.5911
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05166g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30287346159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Niben101Scf05166g02006.1 287 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAqSCPVRKQVQRCAEDMSILITTYEGTHNHP 346
                               58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-32272348IPR003657WRKY domain
SuperFamilySSF1182901.57E-27280348IPR003657WRKY domain
PROSITE profilePS5081128.805282348IPR003657WRKY domain
SMARTSM007741.0E-36287347IPR003657WRKY domain
PfamPF031061.0E-26288346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MPYMEAALRN SIHGAVVKEG NKNKAESSLD DREGCAENIF LKFGKGRKER EDDKSKSSSP  60
HHKNFTLDDE GTAVLVKRER SPPELNSMAS SSSQKEQNDQ LASAKVEMRE VMEENQRLRT  120
HLDRIMKDYR NLQMQFHDIA QKEAEKSSST VNTTHHESDQ EADQLVSLSL GRTSTDMKKE  180
ELSKIFSKDK AHYNNEEEEE HKARGLTLGL DCKFEMSAKT TPTTESSPVN LSPENSLEET  240
KEENGDTWPS NKILKTMRSN GDDDVSQQNP TKRARVSVRV RCDAPTMNDG CQWRKYGQKI  300
AKGNPCPRAY YRCTVAQSCP VRKQVQRCAE DMSILITTYE GTHNHPLPLA ATAMASTTAA  360
AASVLLSGSS SSSDPSPQVT AAATPTSANL NGLNFYLSDT SKSKPPFYFP NSSFSSSSAP  420
NSLPTITLDL TSTSSSSSLS HLTRMGSTST YPPARYNNNS SANVLNFTSM ESNPLPISWS  480
NGVLNYANQA NNKNQNIGSL AFSSRSTQEN FFQSYLQRNN TQSASLPPDA ISAATKAITS  540
DPNFHSALVA ALTSIIGNTG IGNNSAGHNN LNHVTETFPV LSSLPSSSNP NKCSSSFVNK  600
PTSSSANNNL VFFTQPNSSL PFSAPKGKST SPSDNKFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19274348174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIn association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800929.10.0PREDICTED: probable WRKY transcription factor 72 isoform X2
SwissprotD8VNC60.0WK72B_SOLLC; WRKY transcription factor 72B
TrEMBLA0A1U7YNW30.0A0A1U7YNW3_NICSY; probable WRKY transcription factor 72 isoform X2
STRINGXP_009800925.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-62WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]