PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05123g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 544aa    MW: 60408.4 Da    PI: 5.2734
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05123g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-13229285155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  Niben101Scf05123g00001.1 229 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 285
                               78*******************333.44555535555.77******************98 PP

2AP246.58.8e-15330379355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Niben101Scf05123g00001.1 330 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 379
                               9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.00E-20229293No hitNo description
SuperFamilySSF541712.55E-15229295IPR016177DNA-binding domain
PfamPF008473.5E-10229285IPR001471AP2/ERF domain
SMARTSM003801.0E-23230299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-13230294IPR001471AP2/ERF domain
PROSITE profilePS5103217.965230293IPR001471AP2/ERF domain
PRINTSPR003671.2E-6231242IPR001471AP2/ERF domain
CDDcd000183.38E-25328389No hitNo description
SuperFamilySSF541719.15E-18328389IPR016177DNA-binding domain
PROSITE profilePS5103219.137329387IPR001471AP2/ERF domain
SMARTSM003802.1E-34329393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18329387IPR001471AP2/ERF domain
PfamPF008471.7E-9330379IPR001471AP2/ERF domain
PRINTSPR003671.2E-6369389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MSTWLGFSLT PDFNIGDGDE EEEEAIKDYQ SRNENQATGN DANSVEETPL SVMPSYPFPR  60
CDTTTEDCWR YENHEMTSAT NPGEEGPKLE DFLGCCYSNS PPDNEQQIAE INVNIPPTIN  120
PSDHEQEFQV MVPNGQFQSS NEFANSTTGS VYHLPFDGAT SVSGFKSWLR QSAAAAPLIS  180
SAEENSTNIC QTLSLAAAPK KRPVAVKNVT GSREPVPRKS IDTFGQRTSQ YRGVTRHRWT  240
GRYEAHLWDN SCRKEGQTRK GRQGGYDTEE KAARAYDLAA LKYWGPTTHI NFPLNTYEKE  300
VEEMKHMNRQ EFVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  360
STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS TLIASDLAKR SPSKDSGVSP  420
SSFEDYNNSC TSLPQPILAI TNGEQLLQQP ADNSFMDIVP LMTAGSGTRS SSSAQSPKCS  480
GSAEMSCDFG VGLEYPQVYY SSINIQGHKF EDERNGNDEN PQSSGRIGNM DLVHPVPMFA  540
LWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763770.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
RefseqXP_016506032.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S4CY190.0A0A1S4CY19_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U7VPF30.0A0A1U7VPF3_NICSY; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009763770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-128AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]