PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05123g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 544aa MW: 60408.4 Da PI: 5.2734 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6e-13 | 229 | 285 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++t+e+Aa+a++ a++k++g Niben101Scf05123g00001.1 229 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 285 78*******************333.44555535555.77******************98 PP | |||||||
2 | AP2 | 46.5 | 8.8e-15 | 330 | 379 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Niben101Scf05123g00001.1 330 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 379 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.00E-20 | 229 | 293 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-15 | 229 | 295 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-10 | 229 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-23 | 230 | 299 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-13 | 230 | 294 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.965 | 230 | 293 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 231 | 242 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.38E-25 | 328 | 389 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 328 | 389 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.137 | 329 | 387 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-34 | 329 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-18 | 329 | 387 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 330 | 379 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 369 | 389 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MSTWLGFSLT PDFNIGDGDE EEEEAIKDYQ SRNENQATGN DANSVEETPL SVMPSYPFPR 60 CDTTTEDCWR YENHEMTSAT NPGEEGPKLE DFLGCCYSNS PPDNEQQIAE INVNIPPTIN 120 PSDHEQEFQV MVPNGQFQSS NEFANSTTGS VYHLPFDGAT SVSGFKSWLR QSAAAAPLIS 180 SAEENSTNIC QTLSLAAAPK KRPVAVKNVT GSREPVPRKS IDTFGQRTSQ YRGVTRHRWT 240 GRYEAHLWDN SCRKEGQTRK GRQGGYDTEE KAARAYDLAA LKYWGPTTHI NFPLNTYEKE 300 VEEMKHMNRQ EFVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 360 STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS TLIASDLAKR SPSKDSGVSP 420 SSFEDYNNSC TSLPQPILAI TNGEQLLQQP ADNSFMDIVP LMTAGSGTRS SSSAQSPKCS 480 GSAEMSCDFG VGLEYPQVYY SSINIQGHKF EDERNGNDEN PQSSGRIGNM DLVHPVPMFA 540 LWNQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763770.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Refseq | XP_016506032.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-135 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A1S4CY19 | 0.0 | A0A1S4CY19_TOBAC; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A1U7VPF3 | 0.0 | A0A1U7VPF3_NICSY; AP2-like ethylene-responsive transcription factor AIL1 | ||||
STRING | XP_009763770.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-128 | AP2 family protein |
Publications ? help Back to Top | |||
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