PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05011g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 410aa MW: 45725.1 Da PI: 7.0209 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.2e-33 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Niben101Scf05011g01019.1 44 KPRLKWTSDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 98 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.528 | 41 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 42 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.74E-16 | 43 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-24 | 44 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-9 | 46 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.2E-14 | 144 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MYHHHRQDKN MHPSTRMSIS ERHLFLQGGN GNEDSGLVLS TDAKPRLKWT SDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQKYRLSK NLHGQANASG ANKAVAAAGE 120 DRISENSATC MSNPSIGPQP NKNIQISEAI QIQIEVQRRL HEQLELRIEA QGKYLHAVLE 180 KAQETLGRQD MGTVGLEAAK VQLSELVSTV SNQCLNPTFS DIKELSRFSS QQTQVSQLAD 240 RSIDSCLTSC EGSLRDNTMH NNPLGLRPFE FTPSIECKDI ENDTRIQQTA LRWCDNLKES 300 KQLFSAMNEG KEKTFTTETN CKDLSMSIGL QDGNLNGSSN RSDGKFNGTD TAVRLFHQAT 360 NRGDSVPERQ KALQEYKLSY FAPKLDLNMH DETDAASSCK QFDLNGFSWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758039.1 | 0.0 | PREDICTED: uncharacterized protein LOC104210771 isoform X3 | ||||
Refseq | XP_016462512.1 | 0.0 | PREDICTED: uncharacterized protein LOC107785672 isoform X3 | ||||
Swissprot | Q9SQQ9 | 1e-120 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1S3ZE17 | 0.0 | A0A1S3ZE17_TOBAC; uncharacterized protein LOC107785672 isoform X3 | ||||
TrEMBL | A0A1U7V722 | 0.0 | A0A1U7V722_NICSY; uncharacterized protein LOC104210771 isoform X3 | ||||
STRING | XP_009758035.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 1e-114 | G2-like family protein |
Publications ? help Back to Top | |||
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