PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g02014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 471aa    MW: 54267 Da    PI: 8.2465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g02014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.3e-161693998
                              HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                                +k+g l +p  f+ ++    ++e  +  +  + g++W+vk+  ++++    l++GW++F+++++L++gD++vF++dg++ef   v
  Niben101Scf04748g02014.1 16 PGFKQG-LNIPVGFL-NYlT--EHE-HEHAVLKRAGKKWQVKV--NGRQ----LEEGWEKFAEEHDLQVGDMLVFRHDGNMEF--EV 89
                              455555.99*****9.5632..222.35678889*********..8887....**************************9999..77 PP

                              EEE- CS
                        B3 95 kvfr 98
                               +f+
  Niben101Scf04748g02014.1 90 VIFD 93
                              7766 PP
2B348.71.4e-15143224489
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++s+  ++g l lpk+fa ++++ + ++ +l+++des r W+++l    +++r+ + + WkeF  an+Lk+g+ ++F+++ + 
  Niben101Scf04748g02014.1 143 CTVRSYWVSNGYLFLPKQFALANNLTN-KNCDLIIRDESQRPWNLRL--ATYRSRVCIVGRWKEFIVANDLKVGECIMFEVVTN- 223
                               56789999***************7764.5569***************..99999**************************8764. PP

                               E CS
                        B3  89 e 89 
                               +
  Niben101Scf04748g02014.1 224 G 224
                               3 PP
3B357.23.2e-18352436593
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l++++l++pk+fa ++g+ + ++ +l+++de  rsW+v l  +  ++++++++GW eF +a+ LkegD ++F+l+ + +
  Niben101Scf04748g02014.1 352 TVRPYCLSNDLLYIPKQFALANGLTN-KKCDLIIRDELQRSWNVSL--CSFGNSVFIRGGWHEFRNAKCLKEGDCIMFELVTN-G 432
                               578999****************8885.4569***************..888888*************************9874.4 PP

                               E..E CS
                        B3  90 felv 93 
                                ++ 
  Niben101Scf04748g02014.1 433 NKPI 436
                               4455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-22495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-19797IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689795IPR003340B3 DNA binding domain
CDDcd100174.07E-17893No hitNo description
SMARTSM010192.7E-171095IPR003340B3 DNA binding domain
PfamPF023621.0E-121993IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15138231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-17140232IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-9140235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857140234IPR003340B3 DNA binding domain
PfamPF023625.5E-13143226IPR003340B3 DNA binding domain
CDDcd100174.51E-12146219No hitNo description
Gene3DG3DSA:2.40.330.101.9E-4262316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-20346440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20347439IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.492348442IPR003340B3 DNA binding domain
SMARTSM010191.4E-18349443IPR003340B3 DNA binding domain
PfamPF023621.7E-16351438IPR003340B3 DNA binding domain
CDDcd100171.65E-14356439No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MKVRPVKPHF FKPIQPGFKQ GLNIPVGFLN YLTEHEHEHA VLKRAGKKWQ VKVNGRQLEE  60
GWEKFAEEHD LQVGDMLVFR HDGNMEFEVV IFDSGHCDRE YAENLQEEEE GGGGQGDEEE  120
EEGRGEEEEQ GEEANFGQSL FECTVRSYWV SNGYLFLPKQ FALANNLTNK NCDLIIRDES  180
QRPWNLRLAT YRSRVCIVGR WKEFIVANDL KVGECIMFEV VTNGEKPIWQ FHVKPNPIIM  240
SSRKAFPNEE SANHSPYGQS LLLLTVKPYF LTKGYLRLPM QFARVNGLTN KNCGLIIRDE  300
TQRQWNLRLA TYGSQVCIVD KPNPGKKSSS KAFPYAGSNT HKPFSRSHFV CTVRPYCLSN  360
DLLYIPKQFA LANGLTNKKC DLIIRDELQR SWNVSLCSFG NSVFIRGGWH EFRNAKCLKE  420
GDCIMFELVT NGNKPILKFN GKLSHLRSGL IFRSSYMHII YDSVIRAFWM K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254327.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A1J6HZ750.0A0A1J6HZ75_NICAT; B3 domain-containing protein rem17
STRINGXP_009766332.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-36B3 family protein