PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 148aa    MW: 16869.2 Da    PI: 9.9862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18531281088
                               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               +++s++ +l  +fa+++g+ +++  +++l+ e+ rsW+v+l    ++ ++ +t+GWk+Fvkan++++gD++ F+l++++
  Niben101Scf04748g02011.1  53 ASTSANNYLQADFAKSNGLRNRR-CEMILTYEKQRSWSVQL--GPTGHHVAITRGWKKFVKANDVQVGDTFKFELINNE 128
                               4445555999*******999766.5****************..****9**************************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.12544138IPR003340B3 DNA binding domain
SMARTSM010194.4E-750142IPR003340B3 DNA binding domain
PfamPF023627.2E-1654128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1658136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1658136IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-1665137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MMVFLFIYKL DLRANASLQP EGKRPDLDAN RYSAQGLRIE TSDMTAPRAQ VHASTSANNY  60
LQADFAKSNG LRNRRCEMIL TYEKQRSWSV QLGPTGHHVA ITRGWKKFVK ANDVQVGDTF  120
KFELINNETI PIAYFHCKYS GKDPKQSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597679.17e-83PREDICTED: B3 domain-containing protein REM17-like isoform X3
RefseqXP_016469440.17e-83PREDICTED: B3 domain-containing protein REM17-like isoform X3
TrEMBLA0A1S3ZYC92e-81A0A1S3ZYC9_TOBAC; B3 domain-containing protein REM17-like isoform X3
STRINGXP_009597666.16e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-11B3 family protein