PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04664g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 212aa MW: 23561.8 Da PI: 6.0845 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.7e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ +lC+ C ++ H Niben101Scf04664g01002.1 4 LCDVCESAAAILFCAADEACLCHACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 26.2 | 1.6e-08 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Niben101Scf04664g01002.1 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHE 92 6689**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.641 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.7E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.03E-7 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.584 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-6 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.90E-7 | 55 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EACLCHACDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HERYLLIRQR IEFPGDKLGP SNELGLPPTE 120 QGDVRREPAQ PFKLPMIENH QSNRETAKLG LENNVNSSVK MENELIDLNS RPQRMHGQSS 180 NNQEQGMGML SGSNHESVGV VPDGPFKREP EK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766554.1 | 1e-151 | PREDICTED: zinc finger protein CONSTANS-LIKE 1-like isoform X1 | ||||
Refseq | XP_016446351.1 | 1e-151 | PREDICTED: B-box zinc finger protein 19-like isoform X1 | ||||
Swissprot | C0SVM5 | 3e-80 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1S3Y2J7 | 1e-149 | A0A1S3Y2J7_TOBAC; B-box zinc finger protein 19-like isoform X1 | ||||
TrEMBL | A0A1U7VVW9 | 1e-149 | A0A1U7VVW9_NICSY; zinc finger protein CONSTANS-LIKE 1-like isoform X1 | ||||
STRING | XP_009766554.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-82 | DBB family protein |