PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04632g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 345aa    MW: 38959.8 Da    PI: 7.0648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04632g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.86.6e-304497154
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                              kprl+Wt +LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQ  R
  Niben101Scf04632g00008.1 44 KPRLKWTADLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQVQR 97
                              79*************************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.97141101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-274297IPR009057Homeodomain-like
SuperFamilySSF466896.63E-144398IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-214498IPR006447Myb domain, plants
PfamPF002491.5E-84695IPR001005SANT/Myb domain
PfamPF143797.2E-1288120IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MYHQHHHAAN VHPSTRMSFP ERHLFLQGGN VNGDSGLVLS TDAKPRLKWT ADLHERFIEA  60
VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQVQRHLQ LRIEAQGKYL QAVLEKAQET  120
LGTQNLGTIG LEAAKDQLSD LVSKVSNQCL KSAFSEIKEL SGFHTPQTQA TLPADCSMHS  180
CLTSSERPLR DLREMHNNQI GLRPLNFGPC TKDIENETRL QQTELRWRDD LKENRKLFPK  240
MDGDSEKEFT KETNWSNLSM NIGLKGEKRN VSSSYFDGRL NEIDADIKHF HQGADRSDSV  300
KPEKQMSSQG YELPYFAPKM DLNTDDQTDA ASSCKQLDLN GFCWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1943102160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235137.10.0PREDICTED: myb-related protein 2-like isoform X3
TrEMBLA0A1S4DRQ00.0A0A1S4DRQ0_TOBAC; uncharacterized protein LOC107832752 isoform X1
TrEMBLA0A1U7W7S30.0A0A1U7W7S3_NICSY; uncharacterized protein LOC104221350 isoform X1
STRINGXP_009770704.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.12e-81G2-like family protein