PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04614g07007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21607.4 Da PI: 5.3532 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.6 | 5e-11 | 4 | 41 | 3 | 40 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+ + +r+ tf k ++ ++KK +ELS+LC+++++ ii Niben101Scf04614g07007.1 4 IQYHKKRKSTFQKKKACLIKKISELSILCNIKACTIIH 41 5567899***************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.521 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-13 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0013 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-11 | 4 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MELIQYHKKR KSTFQKKKAC LIKKISELSI LCNIKACTII HEGNNCEEIW PNNQNDGSFD 60 PFPEKESRNL AGVVEKKMEN AKGKSEFLKS YRNINQEIWD YPELVDNFNQ KLKSDFDHVN 120 SMGIFYNGQL STDDYEFGNS EYMKIEAEDW LVNNGIIGSS SRMQPMQLNQ LWTGYTDLMP 180 YGYMQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598741.1 | 4e-78 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A1U7XBH9 | 1e-73 | A0A1U7XBH9_NICSY; agamous-like MADS-box protein AGL17 | ||||
STRING | XP_009598741.1 | 1e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 2e-10 | M-type_MADS family protein |