PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04187g00028.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 501aa MW: 54302.5 Da PI: 5.1372

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04187g00028.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	321	369	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf04187g00028.1 321 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 369 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	316	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-11	316	373	No hit	No description
PROSITE profile	PS50888	15.434	318	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	319	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	321	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MDIASKNDSE PEKRNNEEVM NYQSPNISSE WQLGGSNLTN VSMGMVDSFC HTTWDQPTNS 60 PSLGFCDANV QINPSTSNPL GTIGNNWTPS NAMLKGGMFL PPAPMMLPQS LAQFPADSGF 120 IERAARFSCF SGGNFGDMMD PFTLPESMNL YYRGPPPMQG HQEVLASNGL KSPSAQKQHL 180 SNVGESSKDV CITVDQRDKD RSPLKSEKKS ENFDEVAGVS GNESGEAECS GRQEEMDGAG 240 EESYAKNIGS KKRKRGGKDT EPQQPPAESG NDQIEIQKGE QNLKSVAGKS GGKNGKQGSQ 300 ASDPTKEDYI HVRARRGQAT NSHSLAERIR REKISERMKF LQDLVPGCNK VTGKAVMLDE 360 IINYVQSLQR QVEFLSMKLA TVNPLLDFNI DGLLAKNILQ SRAGPSSSLA FPPDMTMPYP 420 ALHPLQPGYG IPSDASRRAI TPHLATTSSG PSDYKDPSSE GQSVWDNELH NIVQMGLNSS 480 IPLSSEDLSG SLPAGQMKAE P

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MDIASKNDSE PEKRNNEEVM NYQSPNISSE WQLGGSNLTN VSMGMVDSFC HTTWDQPTNS  60
PSLGFCDANV QINPSTSNPL GTIGNNWTPS NAMLKGGMFL PPAPMMLPQS LAQFPADSGF  120
IERAARFSCF SGGNFGDMMD PFTLPESMNL YYRGPPPMQG HQEVLASNGL KSPSAQKQHL  180
SNVGESSKDV CITVDQRDKD RSPLKSEKKS ENFDEVAGVS GNESGEAECS GRQEEMDGAG  240
EESYAKNIGS KKRKRGGKDT EPQQPPAESG NDQIEIQKGE QNLKSVAGKS GGKNGKQGSQ  300
ASDPTKEDYI HVRARRGQAT NSHSLAERIR REKISERMKF LQDLVPGCNK VTGKAVMLDE  360
IINYVQSLQR QVEFLSMKLA TVNPLLDFNI DGLLAKNILQ SRAGPSSSLA FPPDMTMPYP  420
ALHPLQPGYG IPSDASRRAI TPHLATTSSG PSDYKDPSSE GQSVWDNELH NIVQMGLNSS  480
IPLSSEDLSG SLPAGQMKAE P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593502.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_009593503.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_009593504.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A1J6IDJ2	0.0	A0A1J6IDJ2_NICAT; Transcription factor bhlh49
STRING	XP_009593502.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-107	bHLH family protein