PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04042g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24742.2 Da PI: 9.7162 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.6e-19 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr ++KKA+EL++LC++e+ +i+fs+ k++ + Niben101Scf04042g00013.1 16 KIEVKNHLQVTFSKRRFSLFKKASELCTLCGVEIGIIVFSPARKVFSF 63 58888899**********************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.138 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-26 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.99E-30 | 8 | 82 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-24 | 8 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-22 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-14 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAKKSSIGHQ KIKIAKIEVK NHLQVTFSKR RFSLFKKASE LCTLCGVEIG IIVFSPARKV 60 FSFGHPNVES IVDRFLSRNH NQISNSSLHL VEAHRNTSVR ELNLQLTQVL AEVEVEQKRG 120 ESLDEMRKTS QGQYWWEAPI SRLVLYELEQ LKDSMDVLKK NETNQASKFM VETANSSSLF 180 GVNGNGIFDN YDIKPARNMV ASNNLHNHNF GFDSAGLF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234247.1 | 1e-144 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_019234717.1 | 1e-144 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6K9V7 | 1e-142 | A0A1J6K9V7_NICAT; Agamous-like mads-box protein agl62 | ||||
TrEMBL | A0A1J6KAY6 | 1e-142 | A0A1J6KAY6_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_009761267.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-54 | AGAMOUS-like 62 |