PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03488g02009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 480aa MW: 53330 Da PI: 5.4662

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03488g02009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.7e-35	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F Niben101Scf03488g02009.1 22 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEF 97 9**************************************************************999.........**** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkk 101 k++k+ll++i+r+k Niben101Scf03488g02009.1 98 VKDQKHLLKNIHRRK 112 ***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.2E-38	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.2E-61	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.4E-36	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	7.1E-20	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-31	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.1E-20	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MDVISATASS AAAGGGGGPA PFLLKTYEMV DDSQTDDIVS WTPTGHSFVV WNPPEFARIL 60 LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEEFVKD QKHLLKNIHR RKPIHSHSHP 120 PGSTVDPERA AFEEEIDKLS REKSGLEANV LRFRQQQSAA KLQLEEMTER VGGIEQRQES 180 LLTFVEKAVL NPDFVEHLAQ KLESMDISAF SKKRRLPQVD SSQPVQENMS VDNHSSSRVE 240 FGNICNQDFS NKLRLELSPA VSDINVVSCS TQSSNEDGGS PHRRISECWS REVQLRTGGV 300 IYTPEAIELS DTGTSFTLKV DSSLPLAATN VESSRLHSLP QSLISNEEVD GHISCQLNLS 360 LASCLSQVDK NQHSSRMAQV GQEMSKHSES QSDANGKNPP NDDKSLPLSH DATGNKQGAA 420 ATPVRVNDVF WEQFLTERPG CSDNEEASSS FKGNSYCEQD DRKSIQGVAS NTRKVEHLTL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MDVISATASS AAAGGGGGPA PFLLKTYEMV DDSQTDDIVS WTPTGHSFVV WNPPEFARIL  60
LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEEFVKD QKHLLKNIHR RKPIHSHSHP  120
PGSTVDPERA AFEEEIDKLS REKSGLEANV LRFRQQQSAA KLQLEEMTER VGGIEQRQES  180
LLTFVEKAVL NPDFVEHLAQ KLESMDISAF SKKRRLPQVD SSQPVQENMS VDNHSSSRVE  240
FGNICNQDFS NKLRLELSPA VSDINVVSCS TQSSNEDGGS PHRRISECWS REVQLRTGGV  300
IYTPEAIELS DTGTSFTLKV DSSLPLAATN VESSRLHSLP QSLISNEEVD GHISCQLNLS  360
LASCLSQVDK NQHSSRMAQV GQEMSKHSES QSDANGKNPP NDDKSLPLSH DATGNKQGAA  420
ATPVRVNDVF WEQFLTERPG CSDNEEASSS FKGNSYCEQD DRKSIQGVAS NTRKVEHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-23	11	111	19	129	Heat shock factor protein 1
5d5v_B	9e-23	11	111	19	129	Heat shock factor protein 1
5d5v_D	9e-23	11	111	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783144.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_016475994.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-165	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S4AHA5	0.0	A0A1S4AHA5_TOBAC; heat stress transcription factor A-5-like
TrEMBL	A0A1U7X886	0.0	A0A1U7X886_NICSY; heat stress transcription factor A-5
STRING	XP_009783144.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-168	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]