PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03370g05005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33145.1 Da PI: 6.9773 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.7 | 1.7e-30 | 100 | 153 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Niben101Scf03370g05005.1 100 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 153 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-20 | 97 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 97 | 156 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 99 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-24 | 101 | 153 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 103 | 152 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MREEDSNWFA KWEEELPSPE ELMPLSQTLI TPDLALAFDI QNPNSPLPKT HHQQHQQTTP 60 PLGVHTPSSH PNSSAEFDSA ELGGTAGSGG VDEPARTLKR PRLVWTPQLH KRFVDAVAHL 120 GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLKRMQG LSNGGSGNGN GSILGLSGGG 180 MVDTATDQLF ASSPVPPHFL HPGRGNSDHY MPFVPVAAMH HHHQMAAVVG HPPQLQQQHR 240 HFGSPPNGQF EVPFLSRQSH QQVQRMGTSV HSSSPVVPSY VEDLESATAA NGRKVLTLFP 300 TGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-32 | 100 | 156 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019261009.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-62 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A314LCA8 | 0.0 | A0A314LCA8_NICAT; Transcription factor lux | ||||
STRING | XP_009790047.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 8e-84 | G2-like family protein |
Publications ? help Back to Top | |||
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