PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03332g04013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 351aa MW: 40135.8 Da PI: 6.8109

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03332g04013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	274	296	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Niben101Scf03332g04013.1 274 FMCRKCGKAFAVRGDWRTHEKNC 296 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.62E-6	256	294	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-6	261	294	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	274	294	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKPPPNF LHNFYSTNYQ SRYNHHPPAP 60 PSPPLKEALP LLSLSPIKHD RGDEVVVQEP VDCCTSTMDV DSKIKKTTDH NCSTTNDAAG 120 LQEEEDENDV TVALHIGLPN PSAADLASIL SSNRDDEEEE TYHDHDNDVT NMNMINTRLN 180 KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YINMQDITVH KSLRGTQPTG MLRLPCYCCT 240 PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW 300 YCICGSDFKH KRSLKDHIKA FGQGHGAYGI DNFEEEEDPA SEVEQDNESI L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKPPPNF LHNFYSTNYQ SRYNHHPPAP  60
PSPPLKEALP LLSLSPIKHD RGDEVVVQEP VDCCTSTMDV DSKIKKTTDH NCSTTNDAAG  120
LQEEEDENDV TVALHIGLPN PSAADLASIL SSNRDDEEEE TYHDHDNDVT NMNMINTRLN  180
KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YINMQDITVH KSLRGTQPTG MLRLPCYCCT  240
PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW  300
YCICGSDFKH KRSLKDHIKA FGQGHGAYGI DNFEEEEDPA SEVEQDNESI L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792207.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q9SVY1	1e-120	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U7XJH1	0.0	A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like
STRING	XP_009792207.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]