PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03256g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 448aa MW: 49509.6 Da PI: 6.8836 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.3e-13 | 312 | 403 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kvl+ sd+++ grl + ++ g++ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F+ Niben101Scf03256g01003.1 312 FEKVLSASDAGRIGRLAYFPPINQSDGLP------IRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 389 88999999999999996555555566666......9**************9989999999***9.******************** PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 +++ +++lv+++++ Niben101Scf03256g01003.1 390 RID-PGGKLVMGFRK 403 887.78878888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 308 | 407 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-14 | 309 | 404 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-17 | 310 | 403 | No hit | No description |
PROSITE profile | PS50863 | 8.995 | 312 | 405 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-10 | 312 | 403 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-11 | 312 | 404 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MGSMICMNEV CRKTTSSEWK KGWSLKSGGF ANLCCNCGSA FENLAFCETF HLGDSGWRDC 60 KMCGKHLHCG CIASKYLFEY LDFGGVGCIS CARRNDGHSM RSMQPLHVEK GVDETNFDKG 120 RLPTVNNIME ISEPGQPFQS QKDENNVSLG NTMQENLLPV GDVSTCFSNL NQQSIASLFR 180 EQDNSKPNQG VKEMYDTTNQ PSLDFSLSTP VSCSSPGLSF PGGGVEGREH EKSPPFQQGL 240 RTRHILLKPP KPSSSFGSDS NKELPSQTRI ARPPAEGRGG RYQLLLRYWP RITDQELRQL 300 SGDLNSTIVP LFEKVLSASD AGRIGRLAYF PPINQSDGLP IRIQDIKGKE WTFQFRFWPN 360 NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGKLVMG FRKATNSVET QEYISSCQQD 420 PQSSHLPDGS GSADTSFTGL TENLNVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-63 | 290 | 411 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487440.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X2 | ||||
Refseq | XP_019250120.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X2 | ||||
Swissprot | Q6Z3U3 | 1e-124 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A1S4BET4 | 0.0 | A0A1S4BET4_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X2 | ||||
STRING | XP_009771757.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-121 | HSI2-like 1 |
Publications ? help Back to Top | |||
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