PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03256g01003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 448aa    MW: 49509.6 Da    PI: 6.8836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03256g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.3e-13312403198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f+kvl+ sd+++ grl    +  ++ g++      ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F+
  Niben101Scf03256g01003.1 312 FEKVLSASDAGRIGRLAYFPPINQSDGLP------IRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 389
                               88999999999999996555555566666......9**************9989999999***9.******************** PP

                               E-SSSEE..EEEEE- CS
                        B3  84 ldgrsefelvvkvfr 98 
                               +++  +++lv+++++
  Niben101Scf03256g01003.1 390 RID-PGGKLVMGFRK 403
                               887.78878888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-20308407IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-14309404IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-17310403No hitNo description
PROSITE profilePS508638.995312405IPR003340B3 DNA binding domain
PfamPF023621.0E-10312403IPR003340B3 DNA binding domain
SMARTSM010192.9E-11312404IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSMICMNEV CRKTTSSEWK KGWSLKSGGF ANLCCNCGSA FENLAFCETF HLGDSGWRDC  60
KMCGKHLHCG CIASKYLFEY LDFGGVGCIS CARRNDGHSM RSMQPLHVEK GVDETNFDKG  120
RLPTVNNIME ISEPGQPFQS QKDENNVSLG NTMQENLLPV GDVSTCFSNL NQQSIASLFR  180
EQDNSKPNQG VKEMYDTTNQ PSLDFSLSTP VSCSSPGLSF PGGGVEGREH EKSPPFQQGL  240
RTRHILLKPP KPSSSFGSDS NKELPSQTRI ARPPAEGRGG RYQLLLRYWP RITDQELRQL  300
SGDLNSTIVP LFEKVLSASD AGRIGRLAYF PPINQSDGLP IRIQDIKGKE WTFQFRFWPN  360
NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGKLVMG FRKATNSVET QEYISSCQQD  420
PQSSHLPDGS GSADTSFTGL TENLNVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-632904112131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487440.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X2
RefseqXP_019250120.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X2
SwissprotQ6Z3U31e-124Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S4BET40.0A0A1S4BET4_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X2
STRINGXP_009771757.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-121HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]