PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03145g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 973aa    MW: 111069 Da    PI: 7.0161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03145g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00039207241432
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C....... CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.as.....k 32 
                               + n+ E+r+R ++ + f   r+ lP+ ++      
  Niben101Scf03145g01007.1 207 KTNILEQRYRTNVGELFTHVRKKLPWaDPkvvkkV 241
                               45************************443555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.0E-5379235IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045571.1E-13238330IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
Gene3DG3DSA:3.40.50.6202.8E-39337406IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523741.04E-88337651No hitNo description
PfamPF007491.5E-121337642IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
CDDcd008076.22E-140337647No hitNo description
TIGRFAMsTIGR004402.5E-178338830IPR004514Glutamine-tRNA synthetase
PRINTSPR009874.0E-7341353IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780344355IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009874.0E-7370383IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.104.5E-44410514No hitNo description
PRINTSPR009874.0E-7515525IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6202.8E-39517566IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.105.4E-31567644IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507151.57E-45645829IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039503.4E-39645829IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.103.0E-30653763IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.101.7E-14764826IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.107.8E-8827875IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
PfamPF039503.3E-24832948IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
SuperFamilySSF507153.09E-32832967IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
Gene3DG3DSA:2.40.240.102.7E-27876966IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
YGLNCPIKIP NKISNSFNSP KGKHLSLTSQ DSSFKESFYD LLKFPKNCHS SISQHLHSRV  60
FGNYEVASEA MVKEEDSKTL ELFLKIGLDE KTAKNTLANN KVTTNLTTVI HEAAVTDGCD  120
RTVGNLIYTV ATKFPANALN HRPTLLQYIV STKIKTPAQL EAAFIFLAAA ASGNLNTQEF  180
EEACGVGVEV SKDAIECAVS EVFEEKKTNI LEQRYRTNVG ELFTHVRKKL PWADPKVVKK  240
VIDVELYKLL GERTAADNEK PVKKKKEKPV KAEDKAKAEE TPAPKPSEEE LNPYLIFPSP  300
EENYKVHTEI YFSDRPVLRA CNSKELLEKH LKVTGRKVLT RFPPEPNGYL HIGHAKAMFV  360
DFGLAKERGG GCYLRFDDTN PEAEKKEYID HIKEIVGWMG WEPYKITHTS DYFQDLYELA  420
VELIRRGHAY VDHQTPEEIK EYREKKMNSP WRDRPIEESL RLFDEMKKGM INEGNATLRM  480
KQDMQSDNFN MYDLIAYRIK FTPHPHAGDK WCIYPSYDYA HCIVDSLENI THSLCTLEFE  540
TRRASYYWLL DALGLYQPFV WEYSRLNVSN TVMSKRKLNR LVTEKWVDGW DDPRLMTLAG  600
LRRRGVTSTA INAFVRGIGI TRSDCSMIHV SRLEYHIREE LNKTAPRTMV VLNPLKVVIT  660
NLEAGLVTDL DAKKWPEAPA NDASSFYKVP FSRVVYIERT DFRLKDSKDY FGLAPGKSVL  720
LRYAYPIKCT DVILADDKET VLEIRAEYDP SKATKPKGVL HWVAEPSPGV DPLKVEVRLF  780
DRLFLSENPA ELEDWLGDLN PESKVVIQNA YAVPLVRTAA LGDRFQFERX LRCRYAYPIK  840
CTDVILADDK ETVLEIRAEY DPSKATKPKG VLHWVAEPSP GVDPLKVEVR LFDRLFLSEN  900
PAELEDWLGD LNPESKVVIQ NAYAVPLVRT AALGDRFQFE RLGYFAVDQD STSEKLVFNR  960
SVTLRDSYAK GGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.07997030798Glutamine--tRNA ligase
4ye6_A0.0799707775Glutamine--tRNA ligase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626236.10.0PREDICTED: glutamine--tRNA ligase
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A1J6HTN30.0A0A1J6HTN3_NICAT; Glutamine--trna ligase, cytoplasmic
STRINGXP_009626236.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69741213