PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03143g11021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 222aa MW: 24656.1 Da PI: 9.7812 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 20.4 | 1.2e-06 | 89 | 106 | 38 | 55 |
G2-like 38 vkgLtlehvkSHLQkYRl 55 +gLt+e++ SHLQkYRl Niben101Scf03143g11021.1 89 RDGLTRENMVSHLQKYRL 106 58***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-6 | 90 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MPLSQTLITP GLTLSFDIKN PSSPLPKTHH QQLQQSTLPV GVHAPSSHPN SSPEFDSAEL 60 GGTAGSGGID EPAPTFKRPR LVWTHSSTRD GLTRENMVSH LQKYRLYLKR MQGLSNGGSG 120 NYMPFVPVST MQHHHQMAAV VGQPPQLQQQ YRHFGSPPNR QFEVPFLSRQ LQQQVRRMGT 180 SVHSSSPMVP SYAEIWNQLQ LLMGEKFLLC LQLGVIDIQG NC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790047.1 | 9e-97 | PREDICTED: transcription factor PCL1-like | ||||
Refseq | XP_016480389.1 | 9e-97 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-16 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A1S4AUN4 | 2e-95 | A0A1S4AUN4_TOBAC; transcription factor PCL1-like | ||||
TrEMBL | A0A1U7XDB2 | 2e-95 | A0A1U7XDB2_NICSY; transcription factor PCL1-like | ||||
STRING | XP_009790047.1 | 4e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-25 | G2-like family protein |
Publications ? help Back to Top | |||
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