PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02945g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 1093aa    MW: 120266 Da    PI: 6.875
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02945g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28215268155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Niben101Scf02945g01004.1 215 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268
                               79*******************.********************************8 PP
2Response_reg813.9e-27351431109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+vdD+p+ +++l+++l++ +y +v+ +  +e al ll+e++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a +++
  Niben101Scf02945g01004.1  35 VLVVDDDPTCLRILEKMLRNCHY-QVTKCNRAEVALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSK 117
                               89*********************.***************999999**********************6654.8************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               + + + +  Ga d+l Kp+ +e+l +
  Niben101Scf02945g01004.1 118 DVVMKGVTHGAYDYLIKPVRIEALKN 143
                               **********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-4232156No hitNo description
SuperFamilySSF521725.55E-3632156IPR011006CheY-like superfamily
SMARTSM004481.4E-3133145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94834149IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2435143IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.99E-2836148No hitNo description
SuperFamilySSF466893.94E-20212272IPR009057Homeodomain-like
PROSITE profilePS5129411.674212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-30214273IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25215268IPR006447Myb domain, plants
PfamPF002491.2E-8217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MVLIYNTVNW FLVGSGSVVK SMSTVSDQFP VGLRVLVVDD DPTCLRILEK MLRNCHYQVT  60
KCNRAEVALS LLRENKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDSKDVV  120
MKGVTHGAYD YLIKPVRIEA LKNIWQHVVR KKKHEWKDNN YDQSGSVEEG DRQQKPPEDA  180
DYSSSANEGN WRNSKKRKEE EEEAEERDDT STLKKPRVVW SVELHQQFVQ AVHQLGIDKA  240
VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGVSQHQ SSLNNSFMGR PDTTFGTISS  300
LNGLDLQAIA AAGQIPAQSL ATLQAAALGR SAATKSAISM PLADQRNLFS FENSKLRFPE  360
GQQQLNNSIK QIDLLHGIPT TMEPKQLANL HHPSQSFVGM NTQVNSMAQH NNSLILRMSQ  420
SQPRAQMLNG ANNDHQVSRL PLSMQQPLSP EGIAGTVPAQ SGIVDNARGS VYNPVSQSSS  480
MVDFSLNQSR QLQSYNFSLG SNNSGMSTLT NRGVLQEEMN SDVKGSRGFP SNYDMFNELH  540
QQKSQNWGLQ NVGSTFDASH HPSIQGTQGV SSQLLLQQGI SSTNHSGQNR NAPIGKPMYS  600
NADESGHVNH MGGPQLNSLG GNMFAVKAER FSDSDYHSTI YHEQFGQDLM SAFLKQQGNV  660
GPVETEFGFD GYTLDNLPKY RLYLRRLSGV SQHQSSLNNS FMGRPDTTFG TISSLNGLDL  720
QAIAAAGQIP AQSLATLQAA ALGRSAATKS AISMPLADQR NLFSFENSKL RFPEGQQQLN  780
NSIKQIDLLH GIPTTMEPKQ LANLHHPSQS FVGMNTQVNS MAQHNNSLIL RMSQSQPRAQ  840
MLNGANNDHQ VSRLPLSMQQ PLSPEGIAGT VPAQSGIVDN ARGSVYNPVS QSSSMVDFSL  900
NQSRQLQSYN FSLGSNNSGM STLTNRGVLQ EEMNSDVKGS RGFPSNYDMF NELHQQKSQN  960
WGLQNVGSTF DASHHPSIQG TQGVSSQLLL QQGISSTNHS GQNRNAPIGK PMYSNADESG  1020
HVNHMGGPQL NSLGGNMFAV KAERFSDSDY HSTIYHEQFG QDLMSAFLKQ QGNVGPVETE  1080
FGFDGYTLDN LPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-21214274464ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253345.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A1J6I2090.0A0A1J6I209_NICAT; Two-component response regulator
STRINGXP_009591694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-169response regulator 2