PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02868g02003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 342aa MW: 37957.4 Da PI: 5.8834 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.8 | 1.4e-05 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C ++H Niben101Scf02868g02003.1 11 KLCDSCKTTSATVFCRADSAFLCIGCDCKIHAA 43 68******99*****************999954 PP | |||||||
2 | zf-B_box | 25.4 | 3e-08 | 53 | 95 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C +H+ H++ Niben101Scf02868g02003.1 53 VWVCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHER 95 689*****************************65777777776 PP | |||||||
3 | CCT | 69.9 | 6.6e-24 | 278 | 321 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Niben101Scf02868g02003.1 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.2E-7 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.926 | 8 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-5 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.594 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-6 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.24E-9 | 54 | 98 | No hit | No description |
SMART | SM00336 | 1.6E-10 | 56 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.1E-18 | 278 | 320 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MSSENWSLTA KLCDSCKTTS ATVFCRADSA FLCIGCDCKI HAANKLASRH ARVWVCEVCE 60 QAPASVTCKA DAAALCVTCD RDIHSANPLA RRHERFPVVP FYDTAVAKSH GGVNDDEKYF 120 DSHENNPQPE EEAEAASWIL PTPKEGTDNQ YKSADYLFND MDSYLDMDTM SCDQKPNNIL 180 QLYQQYCSDG VVPVQNKNES SHLQGPVVNG FPTYEMDFIG SKPYLYNFNS QSISQSVSSS 240 SMEVGVVPEH SATADVSNSL VMNSSGDTVP NPVSGLDREA RVLRYREKRK NRKFEKTIRY 300 ASRKAYAETR PRIKGRFAKR TEIEVDSLLA AADASYGVVP SF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262225.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-102 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A314LAY2 | 0.0 | A0A314LAY2_NICAT; Zinc finger protein constans-like 4 | ||||
STRING | XP_009758697.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-100 | CONSTANS-like 4 |