PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02801g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 446aa    MW: 48808.5 Da    PI: 9.3732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02801g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05199221223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                Cp Cg++F+  ++L++H+ + H
  Niben101Scf02801g00001.1 199 ACPECGEVFPKIESLEHHQAVrH 221
                               6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280198221IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016198226IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-21223442No hitNo description
Gene3DG3DSA:3.90.228.105.0E-9224442IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKERGGSSSS STIVLLFHFL ALLFMALLTF LPEISENTPK EPSKRRKKQQ IKQQKEKQKQ  60
PSSWDQFKNL LTCKQIENST VHDPASKNSK LGSCSSICSF RDVVHGNTRV VHRADNSPES  120
SSLGQETRLL SKNKTSHHHG QSSSSSRSLA RSNGSASSTY TTTSSSSRGM QFRKLSGCYE  180
CHMIVDPSRY PLPRSTICAC PECGEVFPKI ESLEHHQAVR HAVSELGPED SSRNIVEIIF  240
KSSWLKKDNP ICKIERILKV HNTKRTIQRF EDCRDAVKIH AVATGKKNPR CAADGNELLR  300
FYCTSLTCSL GARGSSSLCG SIPSCGVCTL IRHGFQGSKT SGVRTTASSG RAHDCLGSSI  360
TKRRAMLVCR VIAGRVKQAV KDAVASPTTE EETCSGSGSG LLTNGSVIYD SVAGYAGIYS  420
NLEELYVFNP RAILPCFVVI YEALES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616115.10.0PREDICTED: uncharacterized protein LOC104108715
TrEMBLA0A1S3XLA10.0A0A1S3XLA1_TOBAC; uncharacterized protein LOC107766445
STRINGXP_009616115.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-164C2H2-like zinc finger protein