PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02537g13011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1001aa    MW: 109756 Da    PI: 4.535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02537g13011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05254275223
                               EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                C +C+ +F++k++L +H+ +H
  Niben101Scf02537g13011.1 254 HCDKCNVTFNNKDDLLQHQLSH 275
                               5******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.254125198IPR001739Methyl-CpG DNA binding
SuperFamilySSF541717.19E-8133177IPR016177DNA-binding domain
PfamPF014294.2E-5133179IPR001739Methyl-CpG DNA binding
SMARTSM003550.0048253275IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429253280IPR007087Zinc finger, C2H2
SuperFamilySSF576674.42E-6254319No hitNo description
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
SMARTSM003550.32297319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182297324IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
VCVPESSNVG SIGQKRKRGR PRKNENETEN ENVGVGGGGV DRGTDVAIKD IVVYQNVDDN  60
GDRDDKEMLN KDGEPVDLAV LGMLEDPFGE EMRRRTEGLG SSEELLRFLG RLNGQWGSTR  120
KKRRIVDAGE FGNVLPKGWK LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL  180
HGERNENPPT YAKSSGTAEL TNTCALVSTS DLQNGSNNEG PPFHNSSPAV DHGELQVLLN  240
FGELSEVQVG DLLHCDKCNV TFNNKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ  300
FCHKTFEERR RYNGHVGAHV KNQVKTADGS VSINVGEFVE PVASSGAMLR ESIMQDSVVS  360
LRNLTEIADV SADYGRKFAS PGKLQEEDHM EIDDKLEGLS EALNTAPNKT NMCLSSEVIT  420
CNNMGNIYCD SLIANVVAEG TNKGFHKQEG NSVSCSTISL KEQTCVNTSK VIDCSIVEEP  480
EQETGIVDSC GVSVEDGKFS PAVEESKVES DTFVDNESST ALCSNVSVLD ENSLTNAKQV  540
PCTEDHSGKN IDVLNRVPFL AVTSKESRGL SSTGTPSCDE EGSTVDYVKR VFPGCIGEQK  600
PSSIMCDIEN DECGSLVDSN DNKLIMKEDS CSFVPNPDKH VNTAEKDASD GSACFLEEPE  660
QQKGDENGLL SPACDKNGVE AQLLNDSKTT TDEPKVSELQ SVSSNITGFP CNNHAVQKAD  720
AKASTRENTT NRSYNNPLNG SRFDGLENSR HHDLNVVFGN SHVDLDANLN CTTFQLGMEE  780
TYGFQANLLG RFESDKHGEV GIDLSASAFK GKTGDFESNF NTVFHSQLWD EQKVDEVGDS  840
GKKIITGFGC GDAKPDEDVM AGSIWRTGVE NVIHGDSADN STLVVQSSNC FQTYDVLSDK  900
VPSLFGENEK YDGNTGFDGM RSDRTGPVEY SFMSTQSLTS LQEEPRALPY DVDIEQGFNT  960
SFWLGKDDLM PNLAGRNQDY EIKIFVFFRT EKILMGGGLL N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778516.10.0PREDICTED: uncharacterized protein LOC104227857
TrEMBLA0A1U7WMK70.0A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857
STRINGXP_009778516.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619