PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02416g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 194aa MW: 21608.5 Da PI: 8.6076

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02416g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.8	4.8e-13	42	66	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLHerFv+av+qLGG++ Niben101Scf02416g00004.1 42 KPRLRWTAELHERFVDAVTQLGGPD 66 79*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-12	39	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-5	41	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-7	42	67	IPR006447	Myb domain, plants
Pfam	PF14379	3.6E-27	125	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKMYSALPFG MEGNAVGGGS GGVGEYQNIL GDAYLVLTAD QKPRLRWTAE LHERFVDAVT 60 QLGGPDILAK QKNIRIRKYR LGKQSKEVAE NYKDASCVAE SQDTGSSASG SSKVVTQYIN 120 VSGYQVTEAF RVQMEVQRRL HEQLEVQRHV QLRIEAQGKY LQTILEKACK ALNYKAMASP 180 DLDSAREQLS ELTY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257406.1	1e-111	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q94A57	7e-72	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3ZSV7	1e-108	A0A1S3ZSV7_TOBAC; myb family transcription factor APL-like isoform X1
TrEMBL	A0A1U7XTG2	1e-108	A0A1U7XTG2_NICSY; myb family transcription factor APL-like isoform X1
STRING	XP_009794233.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-67	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]