PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02407g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 349aa MW: 39344.6 Da PI: 8.7921 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.5 | 8.7e-19 | 36 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsesss 77 +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ + r g+ ++++qC++k+e+l+kry+ + +++ r+ + s Niben101Scf02407g02002.1 36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCS 120 8************************************976555665589*****************9988876411113455556 PP trihelix 78 tcpyfdqle 86 +++f++++ Niben101Scf02407g02002.1 121 AWVLFKRMD 129 777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-20 | 35 | 131 | No hit | No description |
PROSITE profile | PS50090 | 6.144 | 37 | 97 | IPR017877 | Myb-like domain |
SMART | SM00595 | 3.6E-10 | 44 | 136 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MATLSSSTQD LSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN 60 LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS 120 AWVLFKRMDA MEKGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNSVNT INNRSSSSFQ 180 GVVSNGGGGF RIRIPGMPVA ALPMAKPYSR MEDSGVENTS NFGPGKMFRG DEFVKKADMG 240 KRVAGEGVGP VREKKKEDPI GEMVAAIKML GDGFVRMERM KMDMARELEE MRMEMEMKRT 300 QMILESQQRI VEAFAQAQAR FGAYYALETD YSVELYRNWN LVKNFGTMR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244646.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1J6JAE8 | 0.0 | A0A1J6JAE8_NICAT; Trihelix transcription factor asil2 | ||||
STRING | XP_009775826.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8028 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-58 | Trihelix family protein |