PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02361g07001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 654aa MW: 72133.9 Da PI: 7.9977 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.9 | 3.3e-29 | 62 | 145 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql Niben101Scf02361g07001.1 62 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQL 144 8********************************************************************96..66678******9 PP trihelix 86 e 86 Niben101Scf02361g07001.1 145 A 145 6 PP | |||||||
2 | trihelix | 104.1 | 1e-32 | 460 | 545 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+e+ aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql Niben101Scf02361g07001.1 460 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQL 543 8*********************************************************************8.99*********** PP trihelix 86 ea 87 ea Niben101Scf02361g07001.1 544 EA 545 85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 55 | 119 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0023 | 59 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.4E-18 | 61 | 146 | No hit | No description |
CDD | cd12203 | 1.79E-24 | 61 | 126 | No hit | No description |
SMART | SM00717 | 2.6E-5 | 457 | 519 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-22 | 459 | 546 | No hit | No description |
CDD | cd12203 | 1.09E-28 | 459 | 524 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-5 | 459 | 516 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.689 | 459 | 517 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 654 aa Download sequence Send to blast |
MLGVSSGLMT NTSCGGGAAS ISAPPPQEAP ESGGSSEGGG GGDVAAAGGF SEEGERNSGG 60 NRWPRQETLA LLRIRSEMDV VFRDSSLKGP LWEEVSRKLA DLGYHRSAKK CKEKFENVYK 120 YHRRTKDGRA SKADGKTYRF FDQLAAFENS TSHNSLPPPP LAATPLTMAM PMPVRPNPPI 180 PLSQSMAPPA QNTFVVSQNN VVTAASAVNH PLNVSSLPLS QPPPPPTQPI ITTVNQMNRP 240 QGNTSSLLPN STSSSSTSSD EDIQKRHGKK RKWKNFFERL TKDVIEKQEE LQKKFLETLE 300 KRETERMVRE ETWRVQEMTR MNREHDLLVQ ERSMAAAKDA TIIAFLQKIT EQKNTPIPNI 360 TNASLAQMQF QLSEKSPSGP PHSQPQKQTQ QLTPATPPPP ATASATASAT TPAPAIAVSL 420 PMPIHAQVQT QVPSLPVAKT FEAPKTDNGG ENLSPASSSR WPKEEIEALI RLRTSLDLKY 480 QDNGPKGPLW EEISAGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF 540 HQLEALYKEK AKNEVVPNTG TGFGLKPENN NPMVPIMAEP EQQWPFRSNQ PQQQQQQQGI 600 MSNIIQDHDN ESDSMEEDDY DDDEDEGNAY EIVTNKQPSS MAAATVTAAA TTAV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 263 | 271 | QKRHGKKRK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016514564.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S4DN33 | 0.0 | A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like | ||||
STRING | XP_009594163.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-62 | Trihelix family protein |