PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 366aa MW: 40100.8 Da PI: 5.9188

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02219g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.7e-20	186	235	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g Niben101Scf02219g02002.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 235 59****9.******965...5********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.20E-32	185	245	No hit	No description
SMART	SM00380	4.9E-37	186	249	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.721	186	243	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.62E-23	186	244	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.2E-32	186	244	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	187	198	IPR001471	AP2/ERF domain
Pfam	PF00847	6.8E-14	187	235	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	209	225	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAAAMEFWNS TSVDVHSTPE PIITSGGELM EALEPFMKSA SSSPSSNFPP SISTPFPSSD 60 FHSLPSFPPP LPTPTSTISY PCTFFYQTAP QPMGSESCST STTENTQIFS TGFSGYGMEQ 120 PGSIGLNQLT PAQIQQIQAQ INFQTQQQHQ MMFHDGYHHH ASTMNLLGPK PVQMKQSGSP 180 PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YMLRGDFARL 240 NFPHLRHNGS LIGGEFGEYN PLHSSVDAKL KEICESLAQG KSIDSRKKKT SKGSSAAALV 300 KMEEEESKVV EGGSESDGSG SGSGGSSPVT DLTFPEFTQE ESTWDMCSEN TLLQKYPSHE 360 IDWAAL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAAAMEFWNS TSVDVHSTPE PIITSGGELM EALEPFMKSA SSSPSSNFPP SISTPFPSSD  60
FHSLPSFPPP LPTPTSTISY PCTFFYQTAP QPMGSESCST STTENTQIFS TGFSGYGMEQ  120
PGSIGLNQLT PAQIQQIQAQ INFQTQQQHQ MMFHDGYHHH ASTMNLLGPK PVQMKQSGSP  180
PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YMLRGDFARL  240
NFPHLRHNGS LIGGEFGEYN PLHSSVDAKL KEICESLAQG KSIDSRKKKT SKGSSAAALV  300
KMEEEESKVV EGGSESDGSG SGSGGSSPVT DLTFPEFTQE ESTWDMCSEN TLLQKYPSHE  360
IDWAAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-21	185	243	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507154.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	4e-86	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1S4D1L3	0.0	A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like
STRING	XP_009613405.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1610	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	1e-56	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]