PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02172g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 457aa    MW: 51964.4 Da    PI: 8.5791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02172g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05931123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y C+ C++sF++  +L  H+r+H
  Niben101Scf02172g01005.1  9 YICKFCNESFPSGRSLGGHMRSH 31
                              89********************9 PP
2zf-C2H213.50.0002284103221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C+ CgksF ++  L  H++
  Niben101Scf02172g01005.1  84 VCKECGKSFQSWKGLFGHMK 103
                               6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0029931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868931IPR007087Zinc finger, C2H2
PfamPF139129.5E-9932IPR007087Zinc finger, C2H2
SuperFamilySSF576678.65E-9931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.65E-978105No hitNo description
SMARTSM003550.01683105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01483110IPR007087Zinc finger, C2H2
PfamPF139122.5E-785107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM003550.063300322IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-12300324IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.032300327IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-6300322No hitNo description
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-6366393No hitNo description
SMARTSM003550.16371393IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-10371394IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743371393IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MKKDQELKYI CKFCNESFPS GRSLGGHMRS HLINSSIDQT KKKLPVIESS SPIADYGLRE  60
NPKKTSKFAE SSEDIDLVPN QNKVCKECGK SFQSWKGLFG HMKCHSEKII SSLNSTLEED  120
SWKNNANYAV QNQVMDVQSD TEKATPNKKK RSSRKIKRYI TTTTSSTVTE IEQEQEEVAM  180
SLIILSRDSG YGVGLNLFTD ENGSKISKFK DGERSKSNAR ALRISRNGYK MDKSDDEQKK  240
IKEDKENRFE ESEIEVQYKL VKESYSKKRN IEMNECDISV DSNIKKLRDQ DSHSEKKIKF  300
ECTTCNKSFH SYQALGGHRA SHKRTKECEK ITIEIEHMQN LAADDQLTNT KNSSNDSTIE  360
TSSVSKKLKG YECPICFKIF QSGQALGGHK RSHLIAEAKS NNQAVILQKA TPEMRDFLDL  420
NLPAPVEEES SSEHLGFQKW WIGSSHKHEQ LVSLISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801846.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016513354.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4DJ900.0A0A1S4DJ90_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7YIT40.0A0A1U7YIT4_NICSY; zinc finger protein ZAT9-like
STRINGXP_009801846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-25C2H2-like zinc finger protein