PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01826g03012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 487aa    MW: 55172.5 Da    PI: 7.4688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01826g03012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-16331151299
                               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                                +g  ++p  fa++ ++   ++++  led+sg++W+v++  r++ g+  +++GW +F +++gL+ gDf+vF+++ + + f   v+
  Niben101Scf01826g03012.1  33 FHGKRYFPPMFARSVSHL--TDRETYLEDSSGQRWRVTI--RNHEGSLAIRQGWPKFSSEHGLNLGDFLVFYYVFEvQYF--IVQ 111
                               5667789999**999755..5668***************..********************************9865555..999 PP

                               EE-S CS
                        B3  96 vfrk 99 
                               +++k
  Niben101Scf01826g03012.1 112 IYDK 115
                               9887 PP
2B331.53.2e-104084801792
                               E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                        B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                lp +  +++  ++ k     + l+ ++ + W + +  +++ g  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  Niben101Scf01826g03012.1 408 ELPESW-RKYlmKKAKLDRWIIFLRGPDKKIWPILY--QRRAGVDVLTNGWKTFAAAYGLNHGDDCLFELEN--QLEC 480
                               555555.3554433333445688999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.91522116IPR003340B3 DNA binding domain
SMARTSM010191.4E-825116IPR003340B3 DNA binding domain
CDDcd100171.07E-1431114No hitNo description
PfamPF023621.1E-1432115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-1634118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-1435118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.348392487IPR003340B3 DNA binding domain
SMARTSM010190.0081397485IPR003340B3 DNA binding domain
CDDcd100174.00E-10401476No hitNo description
PfamPF023621.9E-7405479IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-12405480IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-11405478IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
ELEVSGKHTL YWEEMGCEKE ASDKYCKQNG LLFHGKRYFP PMFARSVSHL TDRETYLEDS  60
SGQRWRVTIR NHEGSLAIRQ GWPKFSSEHG LNLGDFLVFY YVFEVQYFIV QIYDKSGCQK  120
IKFYSDSGKG KRKTRTYPEA TSQVKLLQTT DVNPANKRSK ISAVPESEKV PCKTHITKFA  180
TNIDADTGKG QLVYPAVYVD ESFCMIDRDA QYHQGDDRLC LHLSSFEMPA SKPLAEGASS  240
LLKADGGNSN NVQTNLRSQT KPNLVVVADY LNSEELLPKF EAEITGTDRV PAKDIPLLIQ  300
NDCPSGIISS SFLKPAANVN KYDGVSNVTK YQNHWMSTDT TRETRLVKKE YEETAAEAYY  360
PARAISGKEP ANGEKVIKSE PADSGDMPSL KAVSYSCLLE VDGRDFLELP ESWRKYLMKK  420
AKLDRWIIFL RGPDKKIWPI LYQRRAGVDV LTNGWKTFAA AYGLNHGDDC LFELENQLEC  480
IFAVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775872.10.0PREDICTED: uncharacterized protein LOC104225716 isoform X2
TrEMBLA0A1U7W7660.0A0A1U7W766_NICSY; uncharacterized protein LOC104225716 isoform X2
STRINGXP_009775871.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-07B3 family protein