PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01818g03020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YB

Protein Properties

Length: 155aa MW: 16734.6 Da PI: 6.27

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01818g03020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	137.9	2.8e-43	26	112	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 vre+drflPian++rimkk lPanaki+k+ak+tvqecvs easdkcq+ekrktingddl+wal+tlGfedy+eplk+ Niben101Scf01818g03020.1 26 VREHDRFLPIANIGRIMKKGLPANAKIAKEAKDTVQECVS--------EASDKCQKEKRKTINGDDLVWALTTLGFEDYIEPLKA 102 589*********************************97........6******************************** PP NF-YB 86 ylkkyreleg 95 yl +yre ++ Niben101Scf01818g03020.1 103 YLIRYREGDT 112 ****9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.4E-39	23	115	IPR009072	Histone-fold
SuperFamily	SSF47113	3.81E-30	30	115	IPR009072	Histone-fold
Pfam	PF00808	4.6E-17	32	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.7E-9	71	89	No hit	No description
PRINTS	PR00615	6.7E-9	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MAEAPASPGG GGSHESGGER SPQSNVREHD RFLPIANIGR IMKKGLPANA KIAKEAKDTV 60 QECVSEASDK CQKEKRKTIN GDDLVWALTT LGFEDYIEPL KAYLIRYREG DTKGSARGGD 120 GPARKDIVGG QLDSSTQFVY EGSFTHGLDY GNSQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-37	26	109	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-37	26	109	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771322.1	4e-96	PREDICTED: nuclear transcription factor Y subunit B-10-like
Refseq	XP_016436262.1	4e-96	PREDICTED: nuclear transcription factor Y subunit B-10-like
Refseq	XP_019232647.1	5e-96	PREDICTED: nuclear transcription factor Y subunit B-1-like
Refseq	XP_019232655.1	5e-96	PREDICTED: nuclear transcription factor Y subunit B-1-like
Refseq	XP_019232662.1	5e-96	PREDICTED: nuclear transcription factor Y subunit B-1-like
Refseq	XP_019232667.1	5e-96	PREDICTED: nuclear transcription factor Y subunit B-1-like
Swissprot	Q8VYK4	2e-66	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1J6JIA7	1e-94	A0A1J6JIA7_NICAT; Nuclear transcription factor y subunit b-10
TrEMBL	A0A1S3X8P2	1e-94	A0A1S3X8P2_TOBAC; nuclear transcription factor Y subunit B-10-like
TrEMBL	A0A1U7VTW4	1e-94	A0A1U7VTW4_NICSY; nuclear transcription factor Y subunit B-10-like
STRING	XP_009771322.1	2e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	4e-61	nuclear factor Y, subunit B10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]