PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01811g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 222aa MW: 25090 Da PI: 8.4608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01811g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C k Fs++ L H++ H Niben101Scf01811g01005.1 83 FDCNYCLKEFSNSQALGGHQNAH 105 77******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	79	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.47E-6	80	110	No hit	No description
PROSITE profile	PS50157	11.427	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDKDISTLFH PSCNVGGNEP LSKSCMKIKR LKIFGFELDP SQKYLKGEIG DRESVNSSCS 60 TISAGREKQP SNDAKDEPTE KKFDCNYCLK EFSNSQALGG HQNAHKKERM RKKRLQIQET 120 KARLSYYLQA FQSSNNNITN YHGFTSSPYF SDPNLRYDSS DLFTLYEESN ISFSSYHQDS 180 QESCTFTLTH GKGSKEKLSS LPNSASKQMC KALDLELGLG LR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775693.1	1e-143	PREDICTED: zinc finger protein 5-like isoform X1
TrEMBL	A0A1U7WAM1	1e-142	A0A1U7WAM1_NICSY; zinc finger protein 5-like isoform X1
STRING	XP_009775693.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-14	C2H2 family protein