PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01784g07015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28902.4 Da PI: 10.0527 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2e-15 | 11 | 99 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 ffkv++p + ++ l +p +f+ + +g+k e + tl++ +W+v++ +++++ +++ kGW++Fv+ +L+ gDf vF++ g Niben101Scf01784g07015.1 11 FFKVMVP---GFHAKLPIPPDFCLKLKGEKSE--KGTLKH-GKGTWNVEI--GRSKNGvVWFDKGWEQFVQNYNLRIGDFAVFEHLG 89 6677744...4456699******999887555..566666.4569*****..77777779*************************** PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++f +v++++ Niben101Scf01784g07015.1 90 NMNF--NVSLLD 99 9999..888776 PP | |||||||
2 | B3 | 48.2 | 2e-15 | 166 | 241 | 14 | 89 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 l +p +f+ ++ + +++ +tl+ +sg s v+l+++ ++++ +++t+GW++F +n+Lk+gD+++F+ d++++ Niben101Scf01784g07015.1 166 PYLHIPTEFCHSNALL--QNTIITLTGPSGISCPVNLRICSGGKTlyVIMTTGWRNFFLSNRLKVGDVCIFQIDRTNS 241 4589******999777..5678***************6655555588999**********************887633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.744 | 8 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.26E-14 | 9 | 99 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 9 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-18 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.2E-14 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-12 | 11 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-16 | 149 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-17 | 151 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-15 | 152 | 242 | No hit | No description |
SMART | SM01019 | 1.1E-4 | 152 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.644 | 153 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-13 | 167 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MENQLPISRR FFKVMVPGFH AKLPIPPDFC LKLKGEKSEK GTLKHGKGTW NVEIGRSKNG 60 VVWFDKGWEQ FVQNYNLRIG DFAVFEHLGN MNFNVSLLDS TGCDKKYLML EDGKKQQQHV 120 PSQVKSPQCR IEKRKPEGDV LLHQYVEGSS EFTARIKEYN VRKRSPYLHI PTEFCHSNAL 180 LQNTIITLTG PSGISCPVNL RICSGGKTLY VIMTTGWRNF FLSNRLKVGD VCIFQIDRTN 240 SNSKSITMNV RVM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019228605.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A314KN31 | 0.0 | A0A314KN31_NICAT; B3 domain-containing protein rem8 | ||||
STRING | XP_009773257.1 | 1e-177 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-21 | B3 family protein |