PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01782g11003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 288aa    MW: 32112.7 Da    PI: 9.2669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01782g11003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1498144455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Niben101Scf01782g11003.1  98 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 144
                               7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.68894143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-1298143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1998159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1998159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-1498148No hitNo description
SMARTSM003534.3E-18100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGCIFHDSAQ SAFTLCPSTT VCSRNPAHCR HDDSLVDGGG ASQWLLKSIL FTVPFLHTKY  60
QSEASPKSRD VATVDSSSTA SRFRKGCSIT SQEEPSGNHV LAERRRREKL NERFIILRSL  120
VPFVTKMDKA SILGDTIEYV KQLRKKVQDL EARARHTEHS KDAATVKVLQ GRDKRRMNTV  180
DGNVGGGQAK TTASPPSTTA DEEVVQVEVS IIESDALVEL RCPYKEELLL NVMQMLRELQ  240
VEVVAIQSSL NNGVLLAELR AKVKENIYGR KASILEVKRS IHQIIRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1692147357Transcription factor MYC2
5gnj_B6e-1692147357Transcription factor MYC2
5gnj_E6e-1692147357Transcription factor MYC2
5gnj_F6e-1692147357Transcription factor MYC2
5gnj_G6e-1692147357Transcription factor MYC2
5gnj_I6e-1692147357Transcription factor MYC2
5gnj_M6e-1692147357Transcription factor MYC2
5gnj_N6e-1692147357Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107ERRRRE
2103108RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289495.10.0basic helix-loop-helix protein A
RefseqXP_009803796.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU41e-90BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1U7YP840.0A0A1U7YP84_NICSY; basic helix-loop-helix protein A isoform X2
TrEMBLF6KRH60.0F6KRH6_NICSY; Anthocyanin 1-like protein
STRINGXP_009803795.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-45bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]