PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01749g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 338aa    MW: 38637.1 Da    PI: 6.8196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01749g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05175194120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C k+F+r  n++ H+
  Niben101Scf01749g02006.1 175 FSCPLCFKTFNRYNNMQMHM 194
                               89*****************9 PP
2zf-C2H214.69.5e-05259281123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +Cgk F  + + ++H +++
  Niben101Scf01749g02006.1 259 FMCRKCGKAFAVRGDWRTHEKNC 281
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66175202IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-6241279No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6255279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549259279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDPYTNYFH GWFNNLNPLY HFSSSSSSYN YILPSTNFQY NEYFQTSPPS PPLKEPLPLL  60
SLSPTTRQIQ DQDYSSNITT MEVDNNKENK EESFISNFGD DQEDDESVSV ALQLGLPNPS  120
PELISRISTT NTIKETNKED QEVTLANGYS TTSTLHKGQY WIPTPAQILI GPTQFSCPLC  180
FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CFCCAPGCRN NIDHPRAKPL  240
KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK  300
DHIKAFGNGH AAYGIDCLEE EDEPASEIEQ DNDHDPST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780788.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016504595.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-140ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S4CTZ80.0A0A1S4CTZ8_TOBAC; zinc finger protein WIP2-like
TrEMBLA0A1U7WQC90.0A0A1U7WQC9_NICSY; protein TRANSPARENT TESTA 1-like
STRINGXP_009780788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]