PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01727g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 479aa    MW: 52907.6 Da    PI: 7.2861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01727g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.6e-29222280259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +v+++tYeg+Hnh+
  Niben101Scf01727g02007.1 222 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCVEDMSVLITTYEGTHNHS 280
                               8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-30206282IPR003657WRKY domain
SuperFamilySSF1182901.83E-25213282IPR003657WRKY domain
PROSITE profilePS5081127.428216282IPR003657WRKY domain
SMARTSM007744.4E-34221281IPR003657WRKY domain
PfamPF031063.0E-25222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEKILDNSIT ETVVARNQGN NHEEEAVGNS LKDDEFKSSI AEVNELRLEN SRLRTLLEQI  60
QKDYNSLQTR FSNICQPDDK KSVSPTCTTE NVAEEESELV SLRLGRSPSR NEQYKKNDKR  120
RHSCQSSDGL KLGLDYNMEA PNSDPMKIRT DPSPDKVFET KTVDARESGP TSEVDRTMRR  180
DDNEVSQPRP SVKRAGDDEV SQLNVKRARV SVRTKCDYPT INDGCQWRKY GQKISRGNPC  240
PRSYYRCSVA PLCPVRKQVQ RCVEDMSVLI TTYEGTHNHS LPIEATAMAS TTSAAASMLL  300
SGSSSSQSSK DLRNLPNNSK ATPLYLSNSP SNSNPFPTIT LDFTTFPTTS SFTSFNFPTN  360
FQSNAGYLSN SLNFSSPEPD TLSKILGSGY VDYDSTTTLP YSKSLANIGS SNLGRPSPAR  420
KQFDQPVVGK NDNSSNNKLK ENSSQQELTE TLTKVIASDP SFQSVLAAAI SSMVGVTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21208282174WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016490249.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A1S4BN070.0A0A1S4BN07_TOBAC; probable WRKY transcription factor 72
STRINGXP_009775430.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-55WRKY DNA-binding protein 72