PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01683g14005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 25685.9 Da PI: 9.1514 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 147 | 205 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+versaedp++v++tYeg+H h+ Niben101Scf01683g14005.1 147 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERSAEDPTMVITTYEGRHVHS 205 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-34 | 132 | 205 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-29 | 140 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.252 | 142 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-37 | 147 | 206 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 148 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFSQSLFEDQ ADMSSQIGFF TFPPNYNNNM GSAITTTLPF GLCNHKTLTI IPPSFAADNN 60 FLIESTSLRH KEDLTTTIFG GPHLLSLQKS TANTWAWGEV NESNNIKRSR DNIDDHLAIK 120 MKKVKSSRRK VREPRFCFKT LSDVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV 180 KKRVERSAED PTMVITTYEG RHVHSPSLDG EDSQASSQLN NLLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 138 | 204 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630231.1 | 1e-159 | PREDICTED: probable WRKY transcription factor 13 isoform X2 | ||||
Refseq | XP_016480880.1 | 1e-159 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_018634566.1 | 1e-159 | PREDICTED: probable WRKY transcription factor 13 isoform X3 | ||||
TrEMBL | A0A1S4AW95 | 1e-157 | A0A1S4AW95_TOBAC; probable WRKY transcription factor 13 | ||||
STRING | XP_009630231.1 | 1e-158 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10376 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 2e-48 | WRKY DNA-binding protein 13 |