PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01585g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 28074.7 Da PI: 6.1596 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 7.1e-08 | 123 | 168 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+P +++ ae+L+ + +Y+k Lq Niben101Scf01585g01002.1 123 QSIAARQRRKKISEKTQELGKLIPGgH------RMNTAEMLQATSKYVKFLQ 168 57889*******************955......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-12 | 115 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-12 | 115 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.92E-11 | 116 | 171 | No hit | No description |
PROSITE profile | PS50888 | 13.021 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-5 | 123 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-10 | 124 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MQQLNEFLFD FNYDQSLSCY FDPFFDSNEF LEPNYSSCFV PEMQEYYSDF QMSNPKRQKV 60 FQCHYQDIIT HEGNLPNGPI YQSFSFPENI PMPQLEYFPS APVFDSGCCS SAHEKKEKKM 120 SAQSIAARQR RKKISEKTQE LGKLIPGGHR MNTAEMLQAT SKYVKFLQAQ VGLLQFMGSH 180 QENGKSYETP DLQKLVGSSL IQEKLYSTDN CLVPKVFLEE LDKNHEFQHS RSVDQVKKFI 240 TT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771681.1 | 1e-148 | PREDICTED: transcription factor bHLH53 isoform X2 | ||||
Refseq | XP_016492779.1 | 1e-148 | PREDICTED: transcription factor bHLH53-like | ||||
TrEMBL | A0A1S4BV81 | 1e-146 | A0A1S4BV81_TOBAC; transcription factor bHLH53-like | ||||
TrEMBL | A0A1U7W392 | 1e-146 | A0A1U7W392_NICSY; transcription factor bHLH53 isoform X2 | ||||
STRING | XP_009771680.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30670.1 | 8e-26 | bHLH family protein |