PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01478g07007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18422.1 Da PI: 9.0662 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.7 | 1.1e-21 | 24 | 71 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i n qvtfskRr g++KKA+ELS LC+aevavi+ s+ gk+y + Niben101Scf01478g07007.1 24 EIANRNSLQVTFSKRRVGVFKKASELSALCGAEVAVIVESPAGKVYSF 71 68899999**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.913 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-28 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-24 | 16 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-23 | 25 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEKKNDNEEI KKKSKGRRKI RIEEIANRNS LQVTFSKRRV GVFKKASELS ALCGAEVAVI 60 VESPAGKVYS FGYPCVDSVI NRYETGGHVE EDGFSAALRL QIEEESKKKY LEAMGILDKE 120 KGLHWNSIVI LDVDTSLRFQ KFDVRRWLVA LDKKIEGEEE R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016511813.1 | 4e-71 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4DEN6 | 1e-69 | A0A1S4DEN6_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009770753.1 | 5e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-22 | AGAMOUS-like 62 |