PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01433g08025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 161aa MW: 17947.3 Da PI: 5.2848 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.2e-07 | 4 | 31 | 5 | 32 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClle 32 C+ +e+ ++lfC ++ lC+ C ++ Niben101Scf01433g08025.1 4 LCDVCESAAAILFCAADEAALCRACDEK 31 6************************986 PP | |||||||
2 | zf-B_box | 16.4 | 1.9e-05 | 49 | 77 | 14 | 38 |
zf-B_box 14 lqlfCedCqqllCedClleeHkg....Ht 38 + ++Ce +++ lC +C + H g H+ Niben101Scf01433g08025.1 49 AFFYCEVDGSSLCLQCDMIVHVGgkrtHS 77 669***************99966566675 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.1 | 1 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.49E-6 | 3 | 30 | No hit | No description |
CDD | cd00021 | 0.00102 | 47 | 78 | No hit | No description |
SMART | SM00336 | 0.38 | 47 | 81 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MWTLCDVCES AAAILFCAAD EAALCRACDE KGVQNELTIA NFLYVTREAF FYCEVDGSSL 60 CLQCDMIVHV GGKRTHSRYL LLRQKVEFPG DKPGPMEELA GKTLDPGENK REYSHSPKPM 120 VEDNQQNSRF SPVEVSDGSA DGHAKKDKMI DLNVKPNRYH G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599859.1 | 2e-93 | PREDICTED: B-box zinc finger protein 19-like | ||||
Refseq | XP_016486840.1 | 2e-93 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 8e-44 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1S4BD33 | 6e-92 | A0A1S4BD33_TOBAC; B-box zinc finger protein 19-like | ||||
STRING | XP_009599859.1 | 9e-93 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 3e-46 | DBB family protein |