PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01258g02009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 195aa MW: 21499.4 Da PI: 4.6553 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.3 | 9.9e-06 | 4 | 34 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ +++ C ++ lC++C e H Niben101Scf01258g02009.1 4 QCDVCEKAQATVICCADEAALCAKCDIEVHA 34 7******99*******************995 PP | |||||||
2 | zf-B_box | 18.4 | 4.6e-06 | 42 | 70 | 16 | 38 |
zf-B_box 16 lfCedCqqllCedClleeHkg......Ht 38 +fC +++ l+C+dC +++H+ H+ Niben101Scf01258g02009.1 42 IFCVEDRALFCKDCDEAIHSAsslaanHQ 70 5******************6566666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00021 | 5.19E-5 | 3 | 35 | No hit | No description |
SMART | SM00336 | 7.9E-8 | 20 | 74 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00244 | 43 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKIQCDVCEK AQATVICCAD EAALCAKCDI EVHAANKLAT FIFCVEDRAL FCKDCDEAIH 60 SASSLAANHQ RFLATGIRVA LSSSCNKDAV KTQLDPPQPP QQNSQQVCLK MPPHQLSSIT 120 SPSWPKELLE LGELEWLGAI DLFGEQTAAE VPELSVSQAG NTHNIYKPTR YQMSYKKPRI 180 EIPDDDEYFT VPDLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016500562.1 | 1e-104 | PREDICTED: B-box zinc finger protein 24-like isoform X1 | ||||
Swissprot | Q9SID1 | 1e-65 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A2G2WMD7 | 1e-105 | A0A2G2WMD7_CAPBA; B-box zinc finger protein 24 | ||||
TrEMBL | A0A2G3CAJ3 | 1e-105 | A0A2G3CAJ3_CAPCH; B-box zinc finger protein 24 | ||||
STRING | XP_009787482.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5410 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 2e-55 | salt tolerance homologue |
Publications ? help Back to Top | |||
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