PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01111g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 115aa    MW: 12937.7 Da    PI: 9.5404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01111g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.14e-173180155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              + y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  Niben101Scf01111g02001.1 31 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 80
                              68****9.55.6*********843...5***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-103180IPR001471AP2/ERF domain
SMARTSM003801.2E-193297IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-153282IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-233281IPR001471AP2/ERF domain
PROSITE profilePS5103217.7673292IPR001471AP2/ERF domain
CDDcd000181.22E-133366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MAGLSHTAKS SQLSDIEVEN KRSTRTNTKH PVYRGIRCRS GKWVSEIREP RKTTRIWLGT  60
FPTPEMAAAA YDVAALALKG IDMAEAMMMS PPRINSSTWE DSRGDPSYIE SLWSY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434306.16e-38PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ391273e-25TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1S3X3A51e-36A0A1S3X3A5_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGXP_009621025.16e-36(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]