PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00821g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 176aa    MW: 19160.6 Da    PI: 9.1273
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00821g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY63.11.1e-192267146
                     YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                              +d+++sse++Cyv+C+fCnt+lav +P++ l+ +vtv+CGhC++l 
  Niben101Scf00821g01005.1 22 MDLVQSSEHLCYVRCSFCNTVLAVGIPYKRLLDTVTVKCGHCSNLS 67
                              57899**************************************984 PP
2YABBY97.62.9e-309216095163
                     YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                                 +  + s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+nP+i hreafsaaaknWa +
  Niben101Scf00821g01005.1  92 ISRRASSSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNWARY 160
                               2233333677788999*99************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.0E-4927160IPR006780YABBY protein
SuperFamilySSF470951.05E-8104158IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-5114159IPR009071High mobility group box domain
CDDcd013905.37E-6121157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSSPSSASS CVNLEAADRS SMDLVQSSEH LCYVRCSFCN TVLAVGIPYK RLLDTVTVKC  60
GHCSNLSFLS TRPPLQGQCF DHQTALQLSS AISRRASSSS SSEPSSPKAP FVVKPPEKKH  120
RLPSAYNRFM KDEIQRIKAA NPEIPHREAF SAAAKNWARY IPNTPNGTLA ESSNNA
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797005.11e-104PREDICTED: protein CRABS CLAW
RefseqXP_016465526.11e-104PREDICTED: protein CRABS CLAW-like
RefseqXP_019267264.11e-104PREDICTED: protein CRABS CLAW isoform X1
SwissprotQ76EJ07e-63YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1U7YDY21e-102A0A1U7YDY2_NICSY; protein CRABS CLAW
TrEMBLA0A314KZM71e-102A0A314KZM7_NICAT; Protein crabs claw
TrEMBLQ5EMN21e-102Q5EMN2_TOBAC; CRABS CLAW
STRINGXP_009797005.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-62YABBY family protein