PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00687g04018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 944aa MW: 106156 Da PI: 5.7524 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.9 | 4.5e-41 | 112 | 189 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa Niben101Scf00687g04018.1 112 MCQVDDCGVDLSNAKDYHRRHKVCEMHSKSSRALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 189 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-32 | 106 | 174 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.214 | 110 | 187 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-38 | 111 | 192 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.7E-30 | 113 | 186 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.49E-6 | 719 | 832 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.8E-4 | 721 | 832 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.13E-6 | 722 | 832 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 944 aa Download sequence Send to blast |
MEARTGGEMQ LFNKSLEWDP NDWKWDGDLF IARPKIPSSN YQFFPLETGN SSSSCSDEVI 60 IGEFEKRSRR RENDENVEYD SASLSLKLGE QGGHPREFGK RTKQNTTSNR AMCQVDDCGV 120 DLSNAKDYHR RHKVCEMHSK SSRALVSNLM QRFCQQCSRF HALEEFDEGK RSCRRRLAGH 180 NKRRRKTQAD SAYNNQTLND VQASDQDLLC HLLRSLASQG SPYGDNNLSG LLQASSNLLN 240 NRSPSRNSDI VSLVSNGSRR PPIPKEPHFA TTLAAQVPQI SSDVHDVRLE NVQTESCQSP 300 GTSFPIQNSS PAYAQARESS AGRRKLINFD LNDMYDGSDD SRENLERLPM PADRGIGPLE 360 CRSWLQQDSQ QSSPPSRNSD SASTQSPSSS SSDAQSRTDR IVFKLFGKDP SDFPYFLRAQ 420 ILDWLSHSPS EIESYIRPGC IVLTVYLRLP ESAWEELCCD LSSTLSRLLD VPGDSFWRKG 480 WIYIRVQNQI AFVDDGELLL DVSLPFETIE HTSILSVKPI AVPVSDRAQF IVKGYNLTKP 540 STRLLCALEG NYLVTEANDE VEHVDGVKKN AELQSINLTC SIPAVSGRGF IEVEDHGLSN 600 GFFPIIIAEE DVCSEIRMLE SAIELTTADY VNGLTNNVEV KSQAMDFIHE MVWLLHRNNL 660 KARLGSNAIL FPLKRFKWLM EFSIDHDWCA VVRKLLNLLL GGTVGGEENS FLKVSLSEMG 720 LLHKAVRRNS RPLVELLLTY TPEEVADELC SEYQSLVAVN GKFIFRPDSV GPAGLTPLHV 780 AAGIDGYEDV LDSLTDDPGM VAIEAWKNTR DSVGFTPEDY ARLRGHYSYI HLVQRKINRV 840 TAKYIVVDIP YNLSDGNSNQ KDECATDSFE VSQTERRLIQ PCGMCDRKLV YGRHSRSLLY 900 RPVMFSMVAL AAVCVCVALL FKSSPEVLYI FRPFRWEMLD YGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-31 | 112 | 186 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507693.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A1S4D2Y7 | 0.0 | A0A1S4D2Y7_TOBAC; squamosa promoter-binding-like protein 1 | ||||
STRING | XP_009773067.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1871 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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