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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00592g11013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20905.9 Da PI: 7.3589 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 58 | 153 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+ + p +v+++ l +p +f++++ ++ e++ ++l+ ++gr+W+ +++++ + r+ + GW+eF+ +n Lk+ D++vF+l+ Niben101Scf00592g11013.1 58 FIVSMQPTHVSRNFHLNIPCNFFRRYFKE--EETVVILRASDGRTWRARCSFQSNCARI-HSPGWREFAVDNSLKVHDTCVFELM 139 67789999******************855..556899**************99998885.577*********************9 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + e l+v++fr+ Niben101Scf00592g11013.1 140 EGIELVLNVTIFRA 153 88888899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-26 | 52 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-24 | 52 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-22 | 56 | 152 | No hit | No description |
Pfam | PF02362 | 6.0E-18 | 58 | 153 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-17 | 58 | 154 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.563 | 58 | 154 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MRIFLCGGHF VDYIVKHDIL WSFFCLSDFT SSEMTNTWQE KGYTLIDAQC SKLGNPYFIV 60 SMQPTHVSRN FHLNIPCNFF RRYFKEEETV VILRASDGRT WRARCSFQSN CARIHSPGWR 120 EFAVDNSLKV HDTCVFELME GIELVLNVTI FRADSCFLKD SLPLCRQGFP ACTSTSNSQA 180 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-13 | 30 | 155 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-13 | 30 | 155 | 21 | 144 | B3 domain-containing transcription factor VRN1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240661.1 | 1e-100 | PREDICTED: uncharacterized protein LOC109220660 isoform X1 | ||||
Refseq | XP_019240662.1 | 1e-100 | PREDICTED: uncharacterized protein LOC109220660 isoform X2 | ||||
TrEMBL | A0A1S4C2V3 | 8e-89 | A0A1S4C2V3_TOBAC; uncharacterized protein LOC107814576 isoform X1 | ||||
TrEMBL | A0A1S4C375 | 8e-89 | A0A1S4C375_TOBAC; uncharacterized protein LOC107814576 isoform X2 | ||||
TrEMBL | A0A1U7XZ37 | 8e-89 | A0A1U7XZ37_NICSY; uncharacterized protein LOC104243691 isoform X2 | ||||
TrEMBL | A0A1U7YEL2 | 8e-89 | A0A1U7YEL2_NICSY; uncharacterized protein LOC104243691 isoform X1 | ||||
STRING | XP_009797235.1 | 1e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13290 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 6e-15 | related to vernalization1 1 |