PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00590g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 463aa    MW: 52320.3 Da    PI: 5.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00590g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14136187155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h  +Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A++Y+k+L+
  Niben101Scf00590g00007.1 136 QRMTHIVVERNRRKQMNEYLSVLRTLMPDS---YVQRGDQASIVSGAINYVKELE 187
                               79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.62E-14134191No hitNo description
Gene3DG3DSA:4.10.280.104.4E-15134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.821135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-17135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-11141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MALEAVTQQQ QYLYALLETA NWDGGSGSGS GSGSGPGFDY HNNEAFEFLE NNQNVGEGQE  60
YEDYSNWNLP PPSLVDYSQN DFNQWGQNSS THVLDHNFAI PDQLPQLESP VEMSSTTRQR  120
RRRTRSKKNQ EEIESQRMTH IVVERNRRKQ MNEYLSVLRT LMPDSYVQRG DQASIVSGAI  180
NYVKELEQQV QFLCGQKPLN DKKLQDVNGE TSPFSEFFSI PQYSTTMTAS TSENRASGNE  240
YYSRNQQLPA TADIEVTMVE NHANLKIRSK RRPRLLPRII FGLESLRLSV LHLNVSKVDQ  300
FVLCSLSLKV EEDCKLSSVE DIAAVGNQIL DVNGETSPFS EFFSIPQYST TMTASTSENR  360
ASGNEYYSRN QQLPATADIE VTMVENHANL KIRSKRRPRL LPRIIFGLES LRLSVLHLNV  420
SKVDQFVLCS LSLKVEEDCK LSSVEDIAAV GNQILGRIHE EAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117124RQRRRRTR
2136147RMTHIVVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471744.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T42e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4A5740.0A0A1S4A574_TOBAC; transcription factor bHLH94-like
STRINGXP_009803283.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]