PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00477g00010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1308aa MW: 143651 Da PI: 4.5854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00477g00010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	453	474	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F++k++L +H+ +H Niben101Scf00477g00010.1 453 HCDKCNVTFNDKDDLLQHQLSH 474 5******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	452	479	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0064	452	474	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.27E-5	453	518	No hit	No description
PROSITE pattern	PS00028	0	454	474	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.995	496	523	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.9	496	518	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	498	518	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1308 aa Download sequence Send to blast
MASVTVDSSS VTVTVTDSPL HAESIPTVDL RLLSQSELFS LSHCSPSAFN PRRDDDVIVP 60 KIDRSVFNES AGSRKQTYSR LRLAPASSAV SSSSSALRSR TPHLRNSLHN PSYFNNDPEN 120 SQIVALLKQL FGSGTETNPN TSDLIPIRVD YSDSLPVPVP LTDIVVYQNV DDNRDRDDRE 180 MLNKDGEQVD LAFLGTLEDP FGEEMRRRTE GLGSSEELLR FLGRLNGQWG STRKKRRIVD 240 AGEFGNVLPK GWKLLLSIKR KEGRVWLHCR CYISYWRKTS MFDWAKDGVE PLFQDLQSDT 300 FPLCYLARSA TFCAKVKRLF FLLRSFFYIC GGGREEGTTS LSFDLLNLPF LIENAIGFLS 360 PSGRQFETCK EVSSYLFFLH GERNENLLTY AKSSGTAEIT NTCALVSTSD LQDGSNNEGP 420 LFHNSSPAVD HGELQVLLNF GELSEVQVGD LLHCDKCNVT FNDKDDLLQH QLSHRRRRYR 480 NGQSITDGVI IKDGKFECQF CHKTFEERCR YNGHVGAHVK NQVKTADGSV SVNVGEFVEP 540 MASSGAMLRE SIMQDSVVSL RNLTEIADVT ADYGRKSAPP GKIQDEDHME IADKLEGLSE 600 ALNTAPNKTN MCLSSEAITC NNMGNIICET PCDSLIADVV AEGTNKSCHN QEGNSESCSP 660 ISLKEQTCVN TSKVIDCSII EKPEQEGLLC STGIVDSCGV SVEDGKFSPA VEESKVESDR 720 FVDNESSTAL CSNVSVLDEN SLTNAKQVPY TEDHSGKNID VLNRVPFLAE TSKENRGLSS 780 TGNPSCDEEG STVDYVKRVF PGCTGEQKPS SMMCDIENDE CGSLVDSNEN KLIMKEDSCS 840 FVPHPDKHVN TAEKDVSGGS ACFLEEPEQQ KGDENGLLSP ACDKNGVEAQ PLNDSKKTTD 900 EPKVSELQSV SSNITGFPCN NHAVQKADAT DIEKEKSLAF CSLFPAMNLR ASCAEDLDTK 960 VYQSTIEVND QQRAANTLFS STNVPEASAR ENTMNRSYNN PLNGSKFDGL ENSRHHDLNV 1020 VFGSSHVDLD ANLNCTTFQL GMEETYGVQA NLLGRFESDK QGEVGIDLSD SAFKGKTGDF 1080 ESNFNTKVDE VGDSGKKIIA GFGCGDAKSN EDVMAGSIWR MGVENVMHGD SADNSTLVVQ 1140 SSNCFQTYDV LSDKVQSLFG ENEKYDGNAG FDGLRSDRTG PVEYSFMSTQ SLNSLQEEPR 1200 ALPYDVDIEQ GFNTSFWLGK DDLMPNLAGR NQVMLVCVWC RNEFYQEPNQ LGAEAGSIGS 1260 MCPTCSGRIS GQLVASHIMP LSAESVSHLS CGWRMKKRRL VGSGMEDG

Sequence ? help Back to Top

Protein Sequence Length: 1308 aa Download sequence Send to blast

MASVTVDSSS VTVTVTDSPL HAESIPTVDL RLLSQSELFS LSHCSPSAFN PRRDDDVIVP  60
KIDRSVFNES AGSRKQTYSR LRLAPASSAV SSSSSALRSR TPHLRNSLHN PSYFNNDPEN  120
SQIVALLKQL FGSGTETNPN TSDLIPIRVD YSDSLPVPVP LTDIVVYQNV DDNRDRDDRE  180
MLNKDGEQVD LAFLGTLEDP FGEEMRRRTE GLGSSEELLR FLGRLNGQWG STRKKRRIVD  240
AGEFGNVLPK GWKLLLSIKR KEGRVWLHCR CYISYWRKTS MFDWAKDGVE PLFQDLQSDT  300
FPLCYLARSA TFCAKVKRLF FLLRSFFYIC GGGREEGTTS LSFDLLNLPF LIENAIGFLS  360
PSGRQFETCK EVSSYLFFLH GERNENLLTY AKSSGTAEIT NTCALVSTSD LQDGSNNEGP  420
LFHNSSPAVD HGELQVLLNF GELSEVQVGD LLHCDKCNVT FNDKDDLLQH QLSHRRRRYR  480
NGQSITDGVI IKDGKFECQF CHKTFEERCR YNGHVGAHVK NQVKTADGSV SVNVGEFVEP  540
MASSGAMLRE SIMQDSVVSL RNLTEIADVT ADYGRKSAPP GKIQDEDHME IADKLEGLSE  600
ALNTAPNKTN MCLSSEAITC NNMGNIICET PCDSLIADVV AEGTNKSCHN QEGNSESCSP  660
ISLKEQTCVN TSKVIDCSII EKPEQEGLLC STGIVDSCGV SVEDGKFSPA VEESKVESDR  720
FVDNESSTAL CSNVSVLDEN SLTNAKQVPY TEDHSGKNID VLNRVPFLAE TSKENRGLSS  780
TGNPSCDEEG STVDYVKRVF PGCTGEQKPS SMMCDIENDE CGSLVDSNEN KLIMKEDSCS  840
FVPHPDKHVN TAEKDVSGGS ACFLEEPEQQ KGDENGLLSP ACDKNGVEAQ PLNDSKKTTD  900
EPKVSELQSV SSNITGFPCN NHAVQKADAT DIEKEKSLAF CSLFPAMNLR ASCAEDLDTK  960
VYQSTIEVND QQRAANTLFS STNVPEASAR ENTMNRSYNN PLNGSKFDGL ENSRHHDLNV  1020
VFGSSHVDLD ANLNCTTFQL GMEETYGVQA NLLGRFESDK QGEVGIDLSD SAFKGKTGDF  1080
ESNFNTKVDE VGDSGKKIIA GFGCGDAKSN EDVMAGSIWR MGVENVMHGD SADNSTLVVQ  1140
SSNCFQTYDV LSDKVQSLFG ENEKYDGNAG FDGLRSDRTG PVEYSFMSTQ SLNSLQEEPR  1200
ALPYDVDIEQ GFNTSFWLGK DDLMPNLAGR NQVMLVCVWC RNEFYQEPNQ LGAEAGSIGS  1260
MCPTCSGRIS GQLVASHIMP LSAESVSHLS CGWRMKKRRL VGSGMEDG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778516.1	0.0	PREDICTED: uncharacterized protein LOC104227857
TrEMBL	A0A1U7WMK7	0.0	A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857
STRING	XP_009778516.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19